Populus tremula (populus_tremula)
Imported from atlas release summary for Populus tremula.
3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3319
Candidate Genes
BAHD
7.36%
4CL
5.32%
POD
4.43%
C4H
4.26%
NMT
4.03%
C3'H/CYP98A
4.03%
IFS
3.28%
F3H
2.92%
Other Families
64.36%
More Families (96)
UGT
211
2.84%
CYP76
193
2.59%
UFGT
188
2.53%
7DLGT
185
2.49%
T3O
182
2.45%
STR
175
2.35%
CAD
172
2.31%
DWF4/CYP90B1
151
2.03%
SMT1/SMT2/SMT3
128
1.72%
CAS
128
1.72%
IFR
121
1.63%
SGD
118
1.59%
TRI/TRII
117
1.57%
CODM/T6ODM
114
1.53%
F3'H/CYP75B
104
1.4%
H6H
100
1.34%
LAC
97
1.3%
GS
91
1.22%
CYP71
88
1.18%
ANR
87
1.17%
BR6OX2/CYP85A2
86
1.16%
IO
70
0.94%
GES
67
0.9%
CYP90D1
66
0.89%
8HGO
64
0.86%
TPS
64
0.86%
CSE
62
0.83%
RAS
61
0.82%
CCR
57
0.77%
TAT
56
0.75%
AACT
56
0.75%
BBE
55
0.74%
COMT
55
0.74%
16OMT
53
0.71%
HCT
53
0.71%
BR6OX1/CYP85A1
50
0.67%
PYKS
49
0.66%
FNS
47
0.63%
PMT
43
0.58%
T16H
39
0.52%
G8O/G8H
36
0.48%
CNMT
35
0.47%
7DLH
35
0.47%
CPR
35
0.47%
DFR
33
0.44%
NCS
32
0.43%
CPD/CYP90A1
32
0.43%
COR
30
0.4%
LAMT
29
0.39%
F5H/CYP84A
29
0.39%
SLS
28
0.38%
ROT3/CYP90C1
25
0.34%
F3'5'H/CYP75A
24
0.32%
PAL
24
0.32%
SQE
23
0.31%
DXS
22
0.3%
SQS/FDFT1
21
0.28%
SMO1/SMO2
20
0.27%
MVD
19
0.26%
FPPS
18
0.24%
MPO
17
0.23%
MCT/IspD
17
0.23%
TDC
16
0.22%
CHS
16
0.22%
GGPPS
16
0.22%
CYP719
15
0.2%
ANS/LDOX
15
0.2%
CYP51G1
15
0.2%
DET2
15
0.2%
MVK
15
0.2%
ISY
14
0.19%
CMK/IspE
13
0.17%
HMGR
13
0.17%
HPPR
12
0.16%
CYP80B1
11
0.15%
DWF1
11
0.15%
DWF5
10
0.13%
CCoAOMT
9
0.12%
DXR
9
0.12%
TYDC_DDC
8
0.11%
CHI
8
0.11%
DWF7
8
0.11%
CPI1
7
0.09%
HDR/IspH
7
0.09%
FK
6
0.08%
XMT_MXMT_DXMT
5
0.07%
MDS/IspF
5
0.07%
HYD1
4
0.05%
HMGS
4
0.05%
6OMT_4OMT_SOMT
3
0.04%
HDS/IspG
3
0.04%
CYP80F1
2
0.03%
ODC
2
0.03%
ADC
2
0.03%
IDI
2
0.03%
PMK
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 927 | 20 | BAHD (456) | View species results |
| Alkaloid pathway | 791 | 24 | NMT (188) | View species results |
| Phenylpropanoid pathway | 711 | 13 | POD (308) | View species results |
| Flavonoid pathway | 335 | 11 | UFGT (164) | View species results |
| Steroid pathway | 312 | 13 | CAS (122) | View species results |
| Rosmarinic acid pathway | 243 | 7 | 4CL (80) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2142 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 662 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Potra000904g07338.1 | Alkaloid | STR | low | borderline |
| Potra000904g07338.2 | Alkaloid | STR | low | borderline |
| Potra000904g07338.3 | Alkaloid | STR | low | borderline |
| Potra000906g07351.1 | Alkaloid | STR | low | borderline |
| Potra000971g08014.1 | Alkaloid | STR | medium | pass |
| Potra001010g08407.1 | Alkaloid | STR | low | borderline |
| Potra001040g08780.1 | Alkaloid | STR | low | borderline |
| Potra001040g08780.2 | Alkaloid | STR | low | borderline |
| Potra001061g09106.1 | Alkaloid | STR | low | borderline |
| Potra001061g09106.2 | Alkaloid | STR | low | borderline |
| Potra001061g09106.3 | Alkaloid | STR | low | borderline |
| Potra001061g09106.4 | Alkaloid | STR | low | borderline |
| Potra001081g09344.1 | Alkaloid | STR | medium | pass |
| Potra001100g09603.1 | Alkaloid | STR | low | borderline |
| Potra001100g09603.2 | Alkaloid | STR | low | borderline |
| Potra001100g09603.3 | Alkaloid | STR | low | borderline |
| Potra001247g10731.1 | Alkaloid | STR | low | borderline |
| Potra001247g10731.2 | Alkaloid | STR | low | borderline |
| Potra001247g10731.3 | Alkaloid | STR | low | borderline |
| Potra001247g10731.4 | Alkaloid | STR | low | borderline |
| Potra001288g30716.1 | Alkaloid | STR | low | borderline |
| Potra001291g11143.1 | Alkaloid | STR | low | borderline |
| Potra001311g11275.1 | Alkaloid | STR | medium | pass |
| Potra001428g12063.1 | Alkaloid | STR | low | borderline |
| Potra001449g12196.1 | Alkaloid | STR | low | borderline |
| Potra001492g12449.1 | Alkaloid | STR | low | borderline |
| Potra001534g12742.1 | Alkaloid | STR | low | borderline |
| Potra001534g12742.2 | Alkaloid | STR | low | borderline |
| Potra001534g12742.3 | Alkaloid | STR | low | borderline |
| Potra001666g13692.1 | Alkaloid | STR | medium | pass |
| Potra001736g14141.1 | Alkaloid | STR | low | borderline |
| Potra001736g14141.2 | Alkaloid | STR | medium | pass |
| Potra001825g14712.1 | Alkaloid | STR | low | borderline |
| Potra001825g14712.2 | Alkaloid | STR | low | borderline |
| Potra001825g14712.3 | Alkaloid | STR | low | borderline |
| Potra001841g14787.1 | Alkaloid | STR | low | borderline |
| Potra001841g14787.2 | Alkaloid | STR | low | borderline |
| Potra001841g14787.3 | Alkaloid | STR | low | borderline |
| Potra002131g16511.1 | Alkaloid | STR | medium | pass |
| Potra002131g16511.2 | Alkaloid | STR | medium | pass |
| Potra002131g16511.3 | Alkaloid | STR | medium | pass |
| Potra002180g16808.1 | Alkaloid | STR | medium | pass |
| Potra002180g16808.2 | Alkaloid | STR | medium | pass |
| Potra002365g18024.1 | Alkaloid | STR | low | borderline |
| Potra002445g18531.1 | Alkaloid | STR | low | borderline |
| Potra002573g19359.1 | Alkaloid | STR | medium | pass |
| Potra002860g20170.1 | Alkaloid | STR | medium | pass |
| Potra002905g20276.1 | Alkaloid | STR | low | borderline |
| Potra002905g20276.2 | Alkaloid | STR | low | borderline |
| Potra002976g20431.1 | Alkaloid | STR | low | borderline |