PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Potra002497g18861.5 Alkaloid T3O low borderline
Potra002556g19264.1 Alkaloid T3O medium pass
Potra002556g19264.2 Alkaloid T3O medium pass
Potra002699g19788.1 Alkaloid T3O medium pass
Potra002699g19788.2 Alkaloid T3O medium pass
Potra002699g19788.3 Alkaloid T3O medium pass
Potra002923g20324.1 Alkaloid T3O medium pass
Potra002923g20324.2 Alkaloid T3O medium pass
Potra002923g20324.3 Alkaloid T3O low borderline
Potra003058g20643.1 Alkaloid T3O medium borderline
Potra003058g20643.2 Alkaloid T3O medium borderline
Potra003083g20700.1 Alkaloid T3O medium borderline
Potra003114g20768.1 Alkaloid T3O medium borderline
Potra003114g20770.1 Alkaloid T3O medium borderline
Potra003179g20912.1 Alkaloid T3O medium borderline
Potra003191g20955.1 Alkaloid T3O medium pass
Potra003191g33678.1 Alkaloid T3O medium pass
Potra003245g21121.1 Alkaloid T3O medium pass
Potra003245g21121.2 Alkaloid T3O medium pass
Potra003299g21279.1 Alkaloid T3O medium borderline
Potra003442g35603.1 Alkaloid T3O low borderline
Potra003450g21701.1 Alkaloid T3O medium borderline
Potra003450g21702.1 Alkaloid T3O medium borderline
Potra003474g21781.1 Alkaloid T3O medium pass
Potra003518g21879.1 Alkaloid T3O medium pass
Potra003537g21942.1 Alkaloid T3O medium borderline
Potra003537g21942.2 Alkaloid T3O medium borderline
Potra003537g21942.3 Alkaloid T3O medium borderline
Potra003537g21942.4 Alkaloid T3O medium borderline
Potra003659g22346.1 Alkaloid T3O medium borderline
Potra003659g22346.2 Alkaloid T3O medium borderline
Potra003864g23219.1 Alkaloid T3O medium borderline
Potra003900g23414.2 Alkaloid T3O medium pass
Potra003979g23950.1 Alkaloid T3O medium pass
Potra003987g24014.1 Alkaloid T3O medium borderline
Potra004030g24345.1 Alkaloid T3O medium borderline
Potra004056g24397.3 Alkaloid T3O medium pass
Potra004056g24397.4 Alkaloid T3O low borderline
Potra004252g24734.1 Alkaloid T3O medium borderline
Potra004401g24886.1 Alkaloid T3O medium pass
Potra004401g24886.2 Alkaloid T3O medium pass
Potra004401g24886.3 Alkaloid T3O medium pass
Potra004401g24886.5 Alkaloid T3O medium pass
Potra004432g24917.1 Alkaloid T3O medium borderline
Potra004432g24917.2 Alkaloid T3O medium borderline
Potra008300g26135.1 Alkaloid T3O medium borderline
Potra008300g26135.2 Alkaloid T3O medium borderline
Potra008543g26180.1 Alkaloid T3O medium borderline
Potra008732g26223.1 Alkaloid T3O medium borderline
Potra009323g26336.1 Alkaloid T3O medium pass