PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
Potra009264g26317.5 Terpenoid TPS medium pass TPS__00059__sp_B9RXW0_TPS7_RICCO
Potra121378g26601.1 Terpenoid TPS medium pass TPS__00043__sp_A0A348AUW0_TPS1F_CAMHI
Potra149655g26652.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Potra172024g27582.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Potra180572g28113.1 Terpenoid TPS medium pass TPS__00005__sp_A0A140KFG9_TPS1_CAMBE
Potra180572g28113.2 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Potra183734g28329.1 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Potra191870g28772.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Potra194171g28933.1 Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
Potra194171g28933.2 Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
Potra194171g28933.3 Terpenoid TPS medium pass TPS__00111__sp_G0Y7D2_TPS2_LITCU
Potra194171g28933.4 Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
Potra196787g34349.1 Terpenoid TPS medium pass TPS__00005__sp_A0A140KFG9_TPS1_CAMBE
Potra199210g29383.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO