PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Potra001020g08524.1 Alkaloid 7DLGT low borderline
Potra001020g08525.1 Alkaloid 7DLGT medium pass
Potra001053g08999.1 Alkaloid 7DLGT medium pass
Potra001116g09823.1 Alkaloid 7DLGT low borderline
Potra001117g09832.1 Alkaloid 7DLGT medium pass
Potra001117g09832.2 Alkaloid 7DLGT medium pass
Potra001117g09848.1 Alkaloid 7DLGT low borderline
Potra001117g09848.2 Alkaloid 7DLGT low borderline
Potra001145g09981.1 Alkaloid 7DLGT medium pass
Potra001264g10915.1 Alkaloid 7DLGT medium pass
Potra001264g10917.1 Alkaloid 7DLGT low borderline
Potra001264g10918.1 Alkaloid 7DLGT medium pass
Potra001381g11785.1 Alkaloid 7DLGT low borderline
Potra001441g12116.1 Alkaloid 7DLGT medium pass
Potra001441g12116.2 Alkaloid 7DLGT medium pass
Potra001441g12116.3 Alkaloid 7DLGT low borderline
Potra001441g12117.1 Alkaloid 7DLGT low borderline
Potra001509g12588.1 Alkaloid 7DLGT low borderline
Potra001509g12588.2 Alkaloid 7DLGT low borderline
Potra001607g13242.1 Alkaloid 7DLGT low borderline
Potra001607g13247.1 Alkaloid 7DLGT medium pass
Potra001607g13247.2 Alkaloid 7DLGT medium pass
Potra001627g13389.1 Alkaloid 7DLGT medium pass
Potra001659g13622.1 Alkaloid 7DLGT medium pass
Potra001659g13622.2 Alkaloid 7DLGT medium pass
Potra001659g13623.1 Alkaloid 7DLGT medium pass
Potra001720g13996.1 Alkaloid 7DLGT low borderline
Potra001774g14451.1 Alkaloid 7DLGT low borderline
Potra001781g14493.1 Alkaloid 7DLGT medium pass
Potra001781g14495.1 Alkaloid 7DLGT medium pass
Potra001781g14495.2 Alkaloid 7DLGT medium pass
Potra001781g14495.3 Alkaloid 7DLGT medium pass
Potra001781g14495.4 Alkaloid 7DLGT medium pass
Potra001908g15140.1 Alkaloid 7DLGT medium pass
Potra001908g15140.2 Alkaloid 7DLGT medium pass
Potra002035g15908.1 Alkaloid 7DLGT medium pass
Potra002078g16190.1 Alkaloid 7DLGT low borderline
Potra002078g34126.1 Alkaloid 7DLGT medium pass
Potra002084g16248.1 Alkaloid 7DLGT medium pass
Potra002084g16248.2 Alkaloid 7DLGT medium pass
Potra002238g17196.1 Alkaloid 7DLGT medium pass
Potra002248g17270.1 Alkaloid 7DLGT medium pass
Potra002248g17271.1 Alkaloid 7DLGT low borderline
Potra002248g17271.2 Alkaloid 7DLGT low borderline
Potra002249g17279.1 Alkaloid 7DLGT low borderline
Potra002249g17279.2 Alkaloid 7DLGT low borderline
Potra002335g17855.1 Alkaloid 7DLGT medium pass
Potra002394g18210.1 Alkaloid 7DLGT high pass
Potra002402g18275.5 Alkaloid 7DLGT low borderline
Potra002402g18275.6 Alkaloid 7DLGT low borderline