PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Potra005386g25382.2 Alkaloid 7DLGT low borderline
Potra005957g25527.1 Alkaloid 7DLGT low borderline
Potra006434g25682.1 Alkaloid 7DLGT low borderline
Potra006599g25730.1 Alkaloid 7DLGT low borderline
Potra006767g25783.1 Alkaloid 7DLGT medium pass
Potra008301g26136.1 Alkaloid 7DLGT low borderline
Potra008976g26268.1 Alkaloid 7DLGT medium pass
Potra010120g26493.1 Alkaloid 7DLGT low borderline
Potra010120g26493.2 Alkaloid 7DLGT low borderline
Potra010264g26542.1 Alkaloid 7DLGT low borderline
Potra149729g26653.1 Alkaloid 7DLGT low borderline
Potra149729g26654.1 Alkaloid 7DLGT low borderline
Potra152775g26714.1 Alkaloid 7DLGT low borderline
Potra152775g26714.2 Alkaloid 7DLGT low borderline
Potra156118g30923.1 Alkaloid 7DLGT medium pass
Potra156816g26795.1 Alkaloid 7DLGT medium pass
Potra160951g26895.1 Alkaloid 7DLGT medium pass
Potra162313g27008.1 Alkaloid 7DLGT high pass
Potra166950g27242.1 Alkaloid 7DLGT low borderline
Potra166950g27242.2 Alkaloid 7DLGT low borderline
Potra166995g27247.1 Alkaloid 7DLGT low borderline
Potra167387g27272.1 Alkaloid 7DLGT high pass
Potra169534g27450.1 Alkaloid 7DLGT medium pass
Potra170761g27542.1 Alkaloid 7DLGT medium pass
Potra170761g27542.2 Alkaloid 7DLGT low borderline
Potra175062g27770.1 Alkaloid 7DLGT medium pass
Potra179017g31267.1 Alkaloid 7DLGT low borderline
Potra179441g28018.1 Alkaloid 7DLGT low borderline
Potra180059g28071.1 Alkaloid 7DLGT low borderline
Potra183481g28309.1 Alkaloid 7DLGT low borderline
Potra183726g28328.1 Alkaloid 7DLGT medium pass
Potra188698g28628.1 Alkaloid 7DLGT low borderline
Potra188893g28644.1 Alkaloid 7DLGT low borderline
Potra188893g28644.2 Alkaloid 7DLGT low borderline
Potra196048g29079.1 Alkaloid 7DLGT low borderline
Potra198395g29312.1 Alkaloid 7DLGT low borderline
Potra199775g29438.1 Alkaloid 7DLGT low borderline
Potra199855g29446.1 Alkaloid 7DLGT low borderline
Potra200052g29464.1 Alkaloid 7DLGT low borderline
Potra200116g29469.1 Alkaloid 7DLGT high pass
Potra200201g29475.1 Alkaloid 7DLGT medium pass
Potra000344g01217.1 Alkaloid 7DLH medium borderline
Potra000344g01217.2 Alkaloid 7DLH medium borderline
Potra000376g01614.1 Alkaloid 7DLH medium borderline
Potra000432g02300.2 Alkaloid 7DLH medium borderline
Potra000432g02301.2 Alkaloid 7DLH medium borderline
Potra000432g32620.1 Alkaloid 7DLH low borderline
Potra000633g04834.3 Alkaloid 7DLH medium borderline
Potra000803g06374.1 Alkaloid 7DLH medium borderline
Potra000876g07055.2 Alkaloid 7DLH low borderline