PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat05G0046640 Alkaloid STR low borderline
Rsat06G0001270 Alkaloid STR low borderline
Rsat06G0001280 Alkaloid STR low borderline
Rsat06G0002900 Alkaloid STR low borderline
Rsat06G0010870 Alkaloid STR low borderline
Rsat06G0020100 Alkaloid STR low borderline
Rsat06G0021700 Alkaloid STR low borderline
Rsat06G0022020 Alkaloid STR low borderline
Rsat07G0004360 Alkaloid STR low borderline
Rsat07G0005270 Alkaloid STR medium pass
Rsat07G0005890 Alkaloid STR medium pass
Rsat07G0008720 Alkaloid STR low borderline
Rsat07G0011950 Alkaloid STR medium pass
Rsat07G0011960 Alkaloid STR medium pass
Rsat07G0012940 Alkaloid STR low borderline
Rsat07G0020360 Alkaloid STR medium pass
Rsat07G0022810 Alkaloid STR low borderline
Rsat08G0001460 Alkaloid STR low borderline
Rsat08G0026270 Alkaloid STR low borderline
Rsat08G0027080 Alkaloid STR low borderline
Rsat09G0036160 Alkaloid STR medium pass
RsatScaffold2600006990 Alkaloid STR low borderline
Rsat01G0012110 Alkaloid T16H medium borderline
Rsat01G0015240 Alkaloid T16H medium borderline
Rsat01G0021390 Alkaloid T16H medium borderline
Rsat01G0022220 Alkaloid T16H medium borderline
Rsat01G0023030 Alkaloid T16H medium borderline
Rsat01G0042580 Alkaloid T16H medium borderline
Rsat01G0042820 Alkaloid T16H low borderline
Rsat01G0042870 Alkaloid T16H medium borderline
Rsat01G0042900 Alkaloid T16H medium borderline
Rsat01G0046970 Alkaloid T16H medium borderline
Rsat02G0001730 Alkaloid T16H medium borderline
Rsat02G0024270 Alkaloid T16H medium borderline
Rsat02G0029480 Alkaloid T16H medium borderline
Rsat02G0035010 Alkaloid T16H medium borderline
Rsat02G0036220 Alkaloid T16H medium borderline
Rsat02G0036310 Alkaloid T16H medium borderline
Rsat02G0045400 Alkaloid T16H medium borderline
Rsat03G0015180 Alkaloid T16H medium borderline
Rsat03G0015310 Alkaloid T16H medium borderline
Rsat03G0032360 Alkaloid T16H medium borderline
Rsat04G0010250 Alkaloid T16H medium borderline
Rsat04G0010260 Alkaloid T16H medium borderline
Rsat04G0022330 Alkaloid T16H medium borderline
Rsat04G0022690 Alkaloid T16H medium borderline
Rsat04G0039360 Alkaloid T16H medium borderline
Rsat04G0040140 Alkaloid T16H medium borderline
Rsat04G0042490 Alkaloid T16H medium borderline
Rsat04G0043870 Alkaloid T16H medium borderline