PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat04G0054110 Alkaloid T16H medium borderline
Rsat05G0000950 Alkaloid T16H medium borderline
Rsat05G0003520 Alkaloid T16H medium borderline
Rsat05G0007910 Alkaloid T16H medium borderline
Rsat05G0009820 Alkaloid T16H low borderline
Rsat05G0016110 Alkaloid T16H medium borderline
Rsat05G0043550 Alkaloid T16H medium borderline
Rsat05G0043580 Alkaloid T16H medium borderline
Rsat06G0003720 Alkaloid T16H medium borderline
Rsat06G0031280 Alkaloid T16H medium borderline
Rsat06G0031610 Alkaloid T16H medium pass
Rsat07G0000700 Alkaloid T16H medium borderline
Rsat07G0005040 Alkaloid T16H medium borderline
Rsat07G0016080 Alkaloid T16H low borderline
Rsat08G0027800 Alkaloid T16H medium borderline
Rsat08G0027810 Alkaloid T16H medium borderline
Rsat08G0028470 Alkaloid T16H medium borderline
Rsat09G0002620 Alkaloid T16H medium borderline
Rsat09G0008150 Alkaloid T16H medium borderline
RsatScaffold2600007120 Alkaloid T16H low borderline
RsatScaffold29490008690 Alkaloid T16H medium borderline
Rsat01G0001940 Alkaloid T3O medium borderline
Rsat01G0003810 Alkaloid T3O medium pass
Rsat01G0009390 Alkaloid T3O medium pass
Rsat01G0010780 Alkaloid T3O medium pass
Rsat01G0012950 Alkaloid T3O medium pass
Rsat01G0013870 Alkaloid T3O low borderline
Rsat01G0015220 Alkaloid T3O medium borderline
Rsat01G0015230 Alkaloid T3O medium borderline
Rsat01G0017320 Alkaloid T3O medium borderline
Rsat01G0018170 Alkaloid T3O medium borderline
Rsat01G0021530 Alkaloid T3O low borderline
Rsat01G0026680 Alkaloid T3O medium borderline
Rsat01G0026710 Alkaloid T3O medium borderline
Rsat01G0026720 Alkaloid T3O medium borderline
Rsat01G0026740 Alkaloid T3O medium borderline
Rsat01G0026930 Alkaloid T3O medium pass
Rsat01G0039090 Alkaloid T3O medium pass
Rsat01G0042810 Alkaloid T3O medium borderline
Rsat01G0042840 Alkaloid T3O medium borderline
Rsat01G0042850 Alkaloid T3O medium borderline
Rsat01G0042860 Alkaloid T3O medium borderline
Rsat01G0042880 Alkaloid T3O medium borderline
Rsat01G0042890 Alkaloid T3O medium borderline
Rsat01G0044620 Alkaloid T3O medium pass
Rsat01G0045160 Alkaloid T3O medium borderline
Rsat01G0045170 Alkaloid T3O medium borderline
Rsat01G0047020 Alkaloid T3O medium borderline
Rsat01G0047710 Alkaloid T3O medium pass
Rsat01G0048950 Alkaloid T3O medium pass