PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Rsat01G0051480 Rosmarinic Acid C4H low borderline
Rsat01G0053000 Rosmarinic Acid C4H low borderline
Rsat01G0053010 Rosmarinic Acid C4H low borderline
Rsat01G0053020 Rosmarinic Acid C4H low borderline
Rsat01G0053250 Rosmarinic Acid C4H medium pass
Rsat01G0055130 Rosmarinic Acid C4H medium pass
Rsat01G0058820 Rosmarinic Acid C4H low borderline
Rsat01G0059400 Rosmarinic Acid C4H low borderline
Rsat02G0000720 Rosmarinic Acid C4H low borderline
Rsat02G0000730 Rosmarinic Acid C4H low borderline
Rsat02G0001090 Rosmarinic Acid C4H low borderline
Rsat02G0001670 Rosmarinic Acid C4H low borderline
Rsat02G0001680 Rosmarinic Acid C4H low borderline
Rsat02G0001700 Rosmarinic Acid C4H medium pass
Rsat02G0001720 Rosmarinic Acid C4H low borderline
Rsat02G0001730 Rosmarinic Acid C4H low borderline
Rsat02G0001740 Rosmarinic Acid C4H medium pass
Rsat02G0001750 Rosmarinic Acid C4H low borderline
Rsat02G0002470 Rosmarinic Acid C4H low borderline
Rsat02G0002560 Rosmarinic Acid C4H low borderline
Rsat02G0006130 Rosmarinic Acid C4H medium pass
Rsat02G0006140 Rosmarinic Acid C4H low borderline
Rsat02G0013010 Rosmarinic Acid C4H medium pass
Rsat02G0015000 Rosmarinic Acid C4H low borderline
Rsat02G0015590 Rosmarinic Acid C4H low borderline
Rsat02G0018170 Rosmarinic Acid C4H medium pass
Rsat02G0018180 Rosmarinic Acid C4H medium pass
Rsat02G0018190 Rosmarinic Acid C4H medium pass
Rsat02G0018510 Rosmarinic Acid C4H low borderline
Rsat02G0024260 Rosmarinic Acid C4H low borderline
Rsat02G0024270 Rosmarinic Acid C4H low borderline
Rsat02G0024650 Rosmarinic Acid C4H low borderline
Rsat02G0024750 Rosmarinic Acid C4H low borderline
Rsat02G0024800 Rosmarinic Acid C4H low borderline
Rsat02G0029480 Rosmarinic Acid C4H medium pass
Rsat02G0029510 Rosmarinic Acid C4H medium pass
Rsat02G0029520 Rosmarinic Acid C4H low borderline
Rsat02G0035010 Rosmarinic Acid C4H low borderline
Rsat02G0036210 Rosmarinic Acid C4H low borderline
Rsat02G0036220 Rosmarinic Acid C4H low borderline
Rsat02G0036240 Rosmarinic Acid C4H low borderline
Rsat02G0036310 Rosmarinic Acid C4H low borderline
Rsat02G0036670 Rosmarinic Acid C4H low borderline
Rsat02G0041640 Rosmarinic Acid C4H medium pass
Rsat02G0042540 Rosmarinic Acid C4H low borderline
Rsat02G0045400 Rosmarinic Acid C4H low borderline
Rsat03G0001460 Rosmarinic Acid C4H low borderline
Rsat03G0001950 Rosmarinic Acid C4H low borderline
Rsat03G0011260 Rosmarinic Acid C4H low borderline
Rsat03G0011270 Rosmarinic Acid C4H low borderline