PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Rsat03G0015170 Rosmarinic Acid C4H medium pass
Rsat03G0015180 Rosmarinic Acid C4H medium pass
Rsat03G0015310 Rosmarinic Acid C4H medium pass
Rsat03G0016550 Rosmarinic Acid C4H low borderline
Rsat03G0018640 Rosmarinic Acid C4H medium pass
Rsat03G0019520 Rosmarinic Acid C4H low borderline
Rsat03G0023790 Rosmarinic Acid C4H low borderline
Rsat03G0023800 Rosmarinic Acid C4H low borderline
Rsat03G0030090 Rosmarinic Acid C4H medium pass
Rsat03G0030110 Rosmarinic Acid C4H medium pass
Rsat03G0032360 Rosmarinic Acid C4H low borderline
Rsat04G0000420 Rosmarinic Acid C4H medium pass
Rsat04G0000640 Rosmarinic Acid C4H low borderline
Rsat04G0000650 Rosmarinic Acid C4H low borderline
Rsat04G0000890 Rosmarinic Acid C4H low borderline
Rsat04G0001200 Rosmarinic Acid C4H medium pass
Rsat04G0001210 Rosmarinic Acid C4H medium pass
Rsat04G0001220 Rosmarinic Acid C4H low borderline
Rsat04G0001230 Rosmarinic Acid C4H medium pass
Rsat04G0001760 Rosmarinic Acid C4H low borderline
Rsat04G0001820 Rosmarinic Acid C4H low borderline
Rsat04G0010250 Rosmarinic Acid C4H medium pass
Rsat04G0010260 Rosmarinic Acid C4H low borderline
Rsat04G0010590 Rosmarinic Acid C4H low borderline
Rsat04G0011320 Rosmarinic Acid C4H low borderline
Rsat04G0012790 Rosmarinic Acid C4H low borderline
Rsat04G0012870 Rosmarinic Acid C4H low borderline
Rsat04G0016310 Rosmarinic Acid C4H low borderline
Rsat04G0016590 Rosmarinic Acid C4H low borderline
Rsat04G0016690 Rosmarinic Acid C4H low borderline
Rsat04G0016710 Rosmarinic Acid C4H low borderline
Rsat04G0016720 Rosmarinic Acid C4H medium pass
Rsat04G0017110 Rosmarinic Acid C4H low borderline
Rsat04G0021370 Rosmarinic Acid C4H low borderline
Rsat04G0022280 Rosmarinic Acid C4H low borderline
Rsat04G0022290 Rosmarinic Acid C4H low borderline
Rsat04G0022330 Rosmarinic Acid C4H medium pass
Rsat04G0022340 Rosmarinic Acid C4H low borderline
Rsat04G0022350 Rosmarinic Acid C4H medium pass
Rsat04G0022370 Rosmarinic Acid C4H low borderline
Rsat04G0022380 Rosmarinic Acid C4H medium pass
Rsat04G0022390 Rosmarinic Acid C4H low borderline
Rsat04G0022690 Rosmarinic Acid C4H low borderline
Rsat04G0027420 Rosmarinic Acid C4H medium pass
Rsat04G0027480 Rosmarinic Acid C4H low borderline
Rsat04G0034490 Rosmarinic Acid C4H low borderline
Rsat04G0034860 Rosmarinic Acid C4H medium pass
Rsat04G0039110 Rosmarinic Acid C4H low borderline
Rsat04G0039360 Rosmarinic Acid C4H low borderline
Rsat04G0039670 Rosmarinic Acid C4H low borderline