PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Rsat04G0040140 Rosmarinic Acid C4H low borderline
Rsat04G0042490 Rosmarinic Acid C4H low borderline
Rsat04G0043870 Rosmarinic Acid C4H medium pass
Rsat04G0050910 Rosmarinic Acid C4H medium pass
Rsat04G0051760 Rosmarinic Acid C4H low borderline
Rsat04G0051970 Rosmarinic Acid C4H low borderline
Rsat04G0053930 Rosmarinic Acid C4H low borderline
Rsat04G0053940 Rosmarinic Acid C4H medium pass
Rsat04G0053950 Rosmarinic Acid C4H low borderline
Rsat04G0053960 Rosmarinic Acid C4H low borderline
Rsat04G0053970 Rosmarinic Acid C4H low borderline
Rsat04G0054110 Rosmarinic Acid C4H low borderline
Rsat04G0055530 Rosmarinic Acid C4H low borderline
Rsat04G0055930 Rosmarinic Acid C4H medium pass
Rsat04G0057200 Rosmarinic Acid C4H low borderline
Rsat04G0058060 Rosmarinic Acid C4H low borderline
Rsat04G0060710 Rosmarinic Acid C4H low borderline
Rsat04G0061140 Rosmarinic Acid C4H low borderline
Rsat04G0061160 Rosmarinic Acid C4H low borderline
Rsat05G0000950 Rosmarinic Acid C4H low borderline
Rsat05G0003520 Rosmarinic Acid C4H low borderline
Rsat05G0005770 Rosmarinic Acid C4H low borderline
Rsat05G0005780 Rosmarinic Acid C4H low borderline
Rsat05G0005790 Rosmarinic Acid C4H low borderline
Rsat05G0007570 Rosmarinic Acid C4H low borderline
Rsat05G0007860 Rosmarinic Acid C4H low borderline
Rsat05G0007880 Rosmarinic Acid C4H low borderline
Rsat05G0007900 Rosmarinic Acid C4H medium pass
Rsat05G0007910 Rosmarinic Acid C4H low borderline
Rsat05G0009800 Rosmarinic Acid C4H low borderline
Rsat05G0009810 Rosmarinic Acid C4H low borderline
Rsat05G0009820 Rosmarinic Acid C4H low borderline
Rsat05G0013240 Rosmarinic Acid C4H low borderline
Rsat05G0013750 Rosmarinic Acid C4H low borderline
Rsat05G0013890 Rosmarinic Acid C4H medium pass
Rsat05G0016010 Rosmarinic Acid C4H low borderline
Rsat05G0016110 Rosmarinic Acid C4H low borderline
Rsat05G0016220 Rosmarinic Acid C4H low borderline
Rsat05G0021020 Rosmarinic Acid C4H low borderline
Rsat05G0023580 Rosmarinic Acid C4H low borderline
Rsat05G0027170 Rosmarinic Acid C4H medium pass
Rsat05G0033150 Rosmarinic Acid C4H low borderline
Rsat05G0043550 Rosmarinic Acid C4H low borderline
Rsat05G0043560 Rosmarinic Acid C4H medium pass
Rsat05G0043580 Rosmarinic Acid C4H low borderline
Rsat05G0043600 Rosmarinic Acid C4H medium pass
Rsat05G0044300 Rosmarinic Acid C4H low borderline
Rsat05G0047890 Rosmarinic Acid C4H low borderline
Rsat05G0047910 Rosmarinic Acid C4H low borderline
Rsat05G0047920 Rosmarinic Acid C4H low borderline