PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Rsat05G0047930 Rosmarinic Acid C4H low borderline
Rsat05G0047950 Rosmarinic Acid C4H low borderline
Rsat05G0048670 Rosmarinic Acid C4H low borderline
Rsat05G0051280 Rosmarinic Acid C4H low borderline
Rsat05G0051740 Rosmarinic Acid C4H medium pass
Rsat06G0003720 Rosmarinic Acid C4H low borderline
Rsat06G0004510 Rosmarinic Acid C4H low borderline
Rsat06G0013980 Rosmarinic Acid C4H low borderline
Rsat06G0020700 Rosmarinic Acid C4H low borderline
Rsat06G0021180 Rosmarinic Acid C4H low borderline
Rsat06G0023260 Rosmarinic Acid C4H medium pass
Rsat06G0023900 Rosmarinic Acid C4H low borderline
Rsat06G0023950 Rosmarinic Acid C4H low borderline
Rsat06G0026480 Rosmarinic Acid C4H low borderline
Rsat06G0031580 Rosmarinic Acid C4H low borderline
Rsat06G0031600 Rosmarinic Acid C4H low borderline
Rsat06G0031610 Rosmarinic Acid C4H low borderline
Rsat07G0000200 Rosmarinic Acid C4H low borderline
Rsat07G0000700 Rosmarinic Acid C4H low borderline
Rsat07G0001050 Rosmarinic Acid C4H low borderline
Rsat07G0002340 Rosmarinic Acid C4H low borderline
Rsat07G0005040 Rosmarinic Acid C4H medium pass
Rsat07G0011600 Rosmarinic Acid C4H medium pass
Rsat07G0012990 Rosmarinic Acid C4H low borderline
Rsat07G0018460 Rosmarinic Acid C4H low borderline
Rsat07G0019080 Rosmarinic Acid C4H low borderline
Rsat07G0021810 Rosmarinic Acid C4H low borderline
Rsat07G0022310 Rosmarinic Acid C4H low borderline
Rsat07G0022320 Rosmarinic Acid C4H low borderline
Rsat07G0023780 Rosmarinic Acid C4H low borderline
Rsat07G0024860 Rosmarinic Acid C4H low borderline
Rsat07G0025360 Rosmarinic Acid C4H low borderline
Rsat07G0025370 Rosmarinic Acid C4H low borderline
Rsat07G0027190 Rosmarinic Acid C4H low borderline
Rsat07G0030810 Rosmarinic Acid C4H low borderline
Rsat07G0031080 Rosmarinic Acid C4H low borderline
Rsat08G0006290 Rosmarinic Acid C4H medium pass
Rsat08G0010650 Rosmarinic Acid C4H low borderline
Rsat08G0010710 Rosmarinic Acid C4H low borderline
Rsat08G0013210 Rosmarinic Acid C4H low borderline
Rsat08G0015350 Rosmarinic Acid C4H low borderline
Rsat08G0019170 Rosmarinic Acid C4H low borderline
Rsat08G0019180 Rosmarinic Acid C4H low borderline
Rsat08G0019190 Rosmarinic Acid C4H low borderline
Rsat08G0019210 Rosmarinic Acid C4H medium pass
Rsat08G0019650 Rosmarinic Acid C4H low borderline
Rsat08G0019970 Rosmarinic Acid C4H low borderline
Rsat08G0019980 Rosmarinic Acid C4H low borderline
Rsat08G0020000 Rosmarinic Acid C4H low borderline
Rsat08G0025320 Rosmarinic Acid C4H low borderline