PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Family-Level Assignments
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Rsat08G0026660 Rosmarinic Acid C4H low borderline
Rsat08G0027760 Rosmarinic Acid C4H low borderline
Rsat08G0027770 Rosmarinic Acid C4H medium pass
Rsat08G0027780 Rosmarinic Acid C4H low borderline
Rsat08G0027790 Rosmarinic Acid C4H low borderline
Rsat08G0027800 Rosmarinic Acid C4H low borderline
Rsat08G0027810 Rosmarinic Acid C4H low borderline
Rsat08G0028510 Rosmarinic Acid C4H low borderline
Rsat08G0033130 Rosmarinic Acid C4H medium pass
Rsat09G0002600 Rosmarinic Acid C4H low borderline
Rsat09G0002610 Rosmarinic Acid C4H medium pass
Rsat09G0002620 Rosmarinic Acid C4H low borderline
Rsat09G0003600 Rosmarinic Acid C4H low borderline
Rsat09G0003610 Rosmarinic Acid C4H low borderline
Rsat09G0005720 Rosmarinic Acid C4H low borderline
Rsat09G0008090 Rosmarinic Acid C4H low borderline
Rsat09G0008100 Rosmarinic Acid C4H medium pass
Rsat09G0008110 Rosmarinic Acid C4H medium pass
Rsat09G0008140 Rosmarinic Acid C4H low borderline
Rsat09G0011150 Rosmarinic Acid C4H low borderline
Rsat09G0016820 Rosmarinic Acid C4H low borderline
Rsat09G0022810 Rosmarinic Acid C4H low borderline
Rsat09G0027080 Rosmarinic Acid C4H low borderline
Rsat09G0030960 Rosmarinic Acid C4H low borderline
Rsat09G0032320 Rosmarinic Acid C4H medium pass
Rsat09G0035160 Rosmarinic Acid C4H low borderline
Rsat09G0038210 Rosmarinic Acid C4H low borderline
RsatScaffold24290006070 Rosmarinic Acid C4H low borderline
RsatScaffold24510006150 Rosmarinic Acid C4H low borderline
RsatScaffold26530007730 Rosmarinic Acid C4H medium pass
RsatScaffold27160008020 Rosmarinic Acid C4H medium pass
RsatScaffold29490008690 Rosmarinic Acid C4H low borderline
RsatScaffold38170012430 Rosmarinic Acid C4H medium pass
RsatScaffold46150014290 Rosmarinic Acid C4H medium pass
RsatScaffold5350015410 Rosmarinic Acid C4H low borderline
RsatScaffold5350015420 Rosmarinic Acid C4H low borderline
RsatScaffold55440015750 Rosmarinic Acid C4H medium pass
Rsat01G0023970 Rosmarinic Acid CPR medium pass
Rsat01G0050600 Rosmarinic Acid CPR low borderline
Rsat02G0007060 Rosmarinic Acid CPR medium pass
Rsat02G0011420 Rosmarinic Acid CPR medium pass
Rsat02G0011430 Rosmarinic Acid CPR medium pass
Rsat02G0019140 Rosmarinic Acid CPR medium pass
Rsat03G0023210 Rosmarinic Acid CPR low borderline
Rsat04G0004940 Rosmarinic Acid CPR medium pass
Rsat04G0007960 Rosmarinic Acid CPR medium pass
Rsat04G0013210 Rosmarinic Acid CPR medium pass
Rsat05G0000550 Rosmarinic Acid CPR medium pass
Rsat05G0041610 Rosmarinic Acid CPR low borderline
Rsat05G0042720 Rosmarinic Acid CPR low borderline