PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat09G0000150 Rosmarinic Acid CPR low borderline
RsatScaffold22220005330 Rosmarinic Acid CPR medium pass
Rsat01G0027040 Rosmarinic Acid HPPR medium pass
Rsat01G0027050 Rosmarinic Acid HPPR medium pass
Rsat01G0027060 Rosmarinic Acid HPPR medium pass
Rsat06G0031860 Rosmarinic Acid HPPR medium pass
RsatScaffold24470006130 Rosmarinic Acid HPPR medium pass
RsatScaffold2550006530 Rosmarinic Acid HPPR medium pass
Rsat01G0007660 Rosmarinic Acid PAL high pass
Rsat01G0064820 Rosmarinic Acid PAL low borderline
Rsat03G0018680 Rosmarinic Acid PAL medium pass
Rsat04G0048330 Rosmarinic Acid PAL high pass
Rsat04G0057380 Rosmarinic Acid PAL high pass
Rsat05G0027200 Rosmarinic Acid PAL high pass
Rsat05G0051510 Rosmarinic Acid PAL high pass
Rsat01G0005350 Rosmarinic Acid RAS low borderline
Rsat01G0017300 Rosmarinic Acid RAS low borderline
Rsat01G0020350 Rosmarinic Acid RAS low borderline
Rsat01G0020660 Rosmarinic Acid RAS low borderline
Rsat01G0029880 Rosmarinic Acid RAS low borderline
Rsat01G0034710 Rosmarinic Acid RAS low borderline
Rsat01G0037330 Rosmarinic Acid RAS medium pass
Rsat01G0037760 Rosmarinic Acid RAS low borderline
Rsat01G0039250 Rosmarinic Acid RAS low borderline
Rsat01G0048810 Rosmarinic Acid RAS low borderline
Rsat02G0002730 Rosmarinic Acid RAS low borderline
Rsat02G0003520 Rosmarinic Acid RAS low borderline
Rsat02G0007870 Rosmarinic Acid RAS low borderline
Rsat02G0018040 Rosmarinic Acid RAS medium pass
Rsat02G0030700 Rosmarinic Acid RAS low borderline
Rsat02G0049220 Rosmarinic Acid RAS low borderline
Rsat03G0010960 Rosmarinic Acid RAS medium pass
Rsat03G0010970 Rosmarinic Acid RAS medium pass
Rsat03G0021090 Rosmarinic Acid RAS low borderline
Rsat04G0013470 Rosmarinic Acid RAS low borderline
Rsat04G0036670 Rosmarinic Acid RAS medium pass
Rsat04G0050480 Rosmarinic Acid RAS low borderline
Rsat05G0011190 Rosmarinic Acid RAS low borderline
Rsat05G0013620 Rosmarinic Acid RAS medium pass
Rsat05G0040280 Rosmarinic Acid RAS low borderline
Rsat07G0001760 Rosmarinic Acid RAS medium pass
Rsat07G0011050 Rosmarinic Acid RAS low borderline
Rsat07G0017900 Rosmarinic Acid RAS low borderline
Rsat08G0025110 Rosmarinic Acid RAS low borderline
Rsat09G0016550 Rosmarinic Acid RAS medium pass
Rsat01G0005620 Rosmarinic Acid TAT low borderline
Rsat01G0016960 Rosmarinic Acid TAT low borderline
Rsat01G0018530 Rosmarinic Acid TAT medium pass
Rsat01G0024480 Rosmarinic Acid TAT medium pass
Rsat01G0037390 Rosmarinic Acid TAT medium pass