PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
Rsat02G0008260 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat02G0008270 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat02G0012240 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat02G0012250 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat02G0018520 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Rsat02G0026260 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Rsat02G0027740 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat02G0051750 Rosmarinic Acid TAT medium pass TAT__00002__sp_Q9C969_ISS1_ARATH
Rsat03G0027170 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat04G0005900 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat04G0008560 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat04G0008570 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat04G0008580 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat04G0012420 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat04G0012430 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat04G0038190 Rosmarinic Acid TAT medium pass TAT__00002__sp_Q9C969_ISS1_ARATH
Rsat04G0039160 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Rsat04G0039180 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Rsat04G0050230 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Rsat06G0010950 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Rsat07G0009050 Rosmarinic Acid TAT medium pass TAT__00002__sp_Q9C969_ISS1_ARATH
Rsat08G0033430 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat08G0033440 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat08G0033450 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Rsat09G0008030 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
RsatScaffold7900018600 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH