PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Rsat02G0018170 Steroid CYP90D1 low borderline
Rsat02G0024270 Steroid CYP90D1 low borderline
Rsat02G0024650 Steroid CYP90D1 medium borderline
Rsat02G0046770 Steroid CYP90D1 low borderline
Rsat03G0023800 Steroid CYP90D1 low borderline
Rsat04G0010590 Steroid CYP90D1 medium borderline
Rsat04G0016310 Steroid CYP90D1 low borderline
Rsat04G0017110 Steroid CYP90D1 low borderline
Rsat04G0021360 Steroid CYP90D1 low borderline
Rsat04G0021370 Steroid CYP90D1 low borderline
Rsat04G0022370 Steroid CYP90D1 low borderline
Rsat04G0022690 Steroid CYP90D1 low borderline
Rsat04G0053970 Steroid CYP90D1 low borderline
Rsat05G0023580 Steroid CYP90D1 medium borderline
Rsat05G0044300 Steroid CYP90D1 medium borderline
Rsat05G0048670 Steroid CYP90D1 medium borderline
Rsat07G0012990 Steroid CYP90D1 low borderline
Rsat08G0006290 Steroid CYP90D1 low borderline
Rsat08G0010710 Steroid CYP90D1 medium borderline
Rsat08G0015350 Steroid CYP90D1 low borderline
Rsat08G0025320 Steroid CYP90D1 medium borderline
RsatScaffold22330005360 Steroid CYP90D1 low borderline
Rsat02G0047970 Steroid DET2 low borderline
Rsat04G0049030 Steroid DET2 medium pass
Rsat05G0025750 Steroid DET2 low borderline
Rsat01G0055430 Steroid DWF1 medium pass
Rsat01G0000730 Steroid DWF4/CYP90B1 low borderline
Rsat01G0001960 Steroid DWF4/CYP90B1 low borderline
Rsat01G0015220 Steroid DWF4/CYP90B1 low borderline
Rsat01G0015230 Steroid DWF4/CYP90B1 low borderline
Rsat01G0016760 Steroid DWF4/CYP90B1 low borderline
Rsat01G0017320 Steroid DWF4/CYP90B1 low borderline
Rsat01G0017700 Steroid DWF4/CYP90B1 low borderline
Rsat01G0018130 Steroid DWF4/CYP90B1 low borderline
Rsat01G0021390 Steroid DWF4/CYP90B1 low borderline
Rsat01G0026670 Steroid DWF4/CYP90B1 low borderline
Rsat01G0026710 Steroid DWF4/CYP90B1 medium borderline
Rsat01G0026720 Steroid DWF4/CYP90B1 low borderline
Rsat01G0026740 Steroid DWF4/CYP90B1 low borderline
Rsat01G0026930 Steroid DWF4/CYP90B1 medium borderline
Rsat01G0042850 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042860 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042870 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042880 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042890 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042900 Steroid DWF4/CYP90B1 low borderline
Rsat01G0044010 Steroid DWF4/CYP90B1 low borderline
Rsat01G0044620 Steroid DWF4/CYP90B1 medium borderline
Rsat01G0046580 Steroid DWF4/CYP90B1 low borderline
Rsat01G0046970 Steroid DWF4/CYP90B1 low borderline