PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Rsat09G0010050 Steroid CAS medium pass
Rsat09G0012260 Steroid CAS low borderline
Rsat09G0020560 Steroid CAS medium pass
Rsat09G0026000 Steroid CAS low borderline
Rsat09G0026010 Steroid CAS low borderline
Rsat09G0030880 Steroid CAS low borderline
Rsat09G0040570 Steroid CAS medium pass
Rsat09G0040580 Steroid CAS medium pass
Rsat09G0041010 Steroid CAS medium pass
Rsat01G0014260 Steroid CPD/CYP90A1 medium borderline
Rsat01G0021530 Steroid CPD/CYP90A1 low borderline
Rsat01G0039090 Steroid CPD/CYP90A1 medium borderline
Rsat01G0042840 Steroid CPD/CYP90A1 medium borderline
Rsat02G0001700 Steroid CPD/CYP90A1 low borderline
Rsat04G0000610 Steroid CPD/CYP90A1 low borderline
Rsat04G0022350 Steroid CPD/CYP90A1 medium borderline
Rsat05G0007570 Steroid CPD/CYP90A1 medium pass
Rsat05G0011580 Steroid CPD/CYP90A1 low borderline
Rsat05G0016010 Steroid CPD/CYP90A1 low borderline
Rsat06G0020100 Steroid CPD/CYP90A1 low borderline
Rsat06G0031760 Steroid CPD/CYP90A1 medium borderline
Rsat07G0002340 Steroid CPD/CYP90A1 medium borderline
Rsat08G0009460 Steroid CPD/CYP90A1 low borderline
Rsat08G0026270 Steroid CPD/CYP90A1 low borderline
Rsat08G0028130 Steroid CPD/CYP90A1 low borderline
Rsat09G0001760 Steroid CPD/CYP90A1 low borderline
Rsat09G0003610 Steroid CPD/CYP90A1 medium borderline
Rsat09G0005720 Steroid CPD/CYP90A1 medium borderline
Rsat01G0018590 Steroid CPI1 high pass
Rsat03G0028340 Steroid CPI1 high pass
Rsat02G0002560 Steroid CYP51G1 medium borderline
Rsat02G0013010 Steroid CYP51G1 medium borderline
Rsat03G0015310 Steroid CYP51G1 medium borderline
Rsat04G0000420 Steroid CYP51G1 medium borderline
Rsat04G0001820 Steroid CYP51G1 medium borderline
Rsat04G0010250 Steroid CYP51G1 medium borderline
Rsat04G0010260 Steroid CYP51G1 medium borderline
Rsat04G0053940 Steroid CYP51G1 medium borderline
Rsat05G0003520 Steroid CYP51G1 medium borderline
Rsat05G0013890 Steroid CYP51G1 medium borderline
Rsat05G0016110 Steroid CYP51G1 medium borderline
Rsat06G0031280 Steroid CYP51G1 medium borderline
Rsat07G0000700 Steroid CYP51G1 medium borderline
Rsat08G0027810 Steroid CYP51G1 medium borderline
Rsat08G0028470 Steroid CYP51G1 medium borderline
Rsat08G0033130 Steroid CYP51G1 medium borderline
RsatScaffold24510006150 Steroid CYP51G1 medium borderline
Rsat01G0001940 Steroid CYP90D1 low borderline
Rsat01G0059400 Steroid CYP90D1 medium borderline
Rsat02G0015000 Steroid CYP90D1 low borderline