PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Rsat07G0031080 Steroid BR6OX2/CYP85A2 low borderline
Rsat08G0010080 Steroid BR6OX2/CYP85A2 low borderline
Rsat08G0013210 Steroid BR6OX2/CYP85A2 low borderline
Rsat08G0019170 Steroid BR6OX2/CYP85A2 low borderline
Rsat08G0019180 Steroid BR6OX2/CYP85A2 low borderline
Rsat08G0019970 Steroid BR6OX2/CYP85A2 low borderline
Rsat08G0020000 Steroid BR6OX2/CYP85A2 low borderline
Rsat08G0026660 Steroid BR6OX2/CYP85A2 low borderline
Rsat08G0027760 Steroid BR6OX2/CYP85A2 low borderline
Rsat08G0028510 Steroid BR6OX2/CYP85A2 low borderline
Rsat09G0002610 Steroid BR6OX2/CYP85A2 low borderline
Rsat09G0008090 Steroid BR6OX2/CYP85A2 low borderline
Rsat09G0018610 Steroid BR6OX2/CYP85A2 low borderline
RsatScaffold26530007730 Steroid BR6OX2/CYP85A2 low borderline
RsatScaffold27160008020 Steroid BR6OX2/CYP85A2 low borderline
RsatScaffold38170012430 Steroid BR6OX2/CYP85A2 low borderline
RsatScaffold46150014290 Steroid BR6OX2/CYP85A2 low borderline
RsatScaffold5350015410 Steroid BR6OX2/CYP85A2 low borderline
RsatScaffold55440015750 Steroid BR6OX2/CYP85A2 low borderline
Rsat01G0003200 Steroid CAS medium pass
Rsat01G0017310 Steroid CAS medium pass
Rsat01G0018150 Steroid CAS low borderline
Rsat01G0024700 Steroid CAS low borderline
Rsat01G0035110 Steroid CAS medium pass
Rsat01G0041180 Steroid CAS low borderline
Rsat01G0045780 Steroid CAS medium pass
Rsat01G0064350 Steroid CAS medium pass
Rsat02G0017500 Steroid CAS medium pass
Rsat02G0018760 Steroid CAS medium pass
Rsat02G0028740 Steroid CAS low borderline
Rsat03G0028060 Steroid CAS medium pass
Rsat03G0032150 Steroid CAS medium pass
Rsat03G0033310 Steroid CAS medium pass
Rsat04G0011950 Steroid CAS medium pass
Rsat04G0015100 Steroid CAS medium pass
Rsat04G0018210 Steroid CAS medium pass
Rsat04G0052980 Steroid CAS medium pass
Rsat04G0059640 Steroid CAS medium pass
Rsat04G0060920 Steroid CAS medium pass
Rsat05G0001460 Steroid CAS medium pass
Rsat05G0015570 Steroid CAS medium pass
Rsat05G0021440 Steroid CAS medium pass
Rsat05G0043520 Steroid CAS medium pass
Rsat05G0055200 Steroid CAS medium pass
Rsat05G0055210 Steroid CAS medium pass
Rsat06G0021020 Steroid CAS medium pass
Rsat07G0009780 Steroid CAS medium pass
Rsat08G0010570 Steroid CAS medium pass
Rsat09G0002300 Steroid CAS low borderline
Rsat09G0010040 Steroid CAS medium pass