PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat05G0047940 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0047950 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0048670 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0051280 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0051740 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0057590 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0001510 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0004440 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0004520 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0009940 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0013980 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0020700 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0023260 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat06G0023700 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0023900 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat06G0023950 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat06G0026480 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0031580 Phenylpropanoid C3'H/CYP98A low borderline
Rsat06G0031600 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat06G0031760 Phenylpropanoid C3'H/CYP98A low borderline
Rsat07G0000200 Phenylpropanoid C3'H/CYP98A high pass
Rsat07G0000700 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat07G0001050 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat07G0002340 Phenylpropanoid C3'H/CYP98A low borderline
Rsat07G0005040 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat07G0011600 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat07G0012990 Phenylpropanoid C3'H/CYP98A low borderline
Rsat07G0018460 Phenylpropanoid C3'H/CYP98A low borderline
Rsat07G0022310 Phenylpropanoid C3'H/CYP98A high pass
Rsat07G0022320 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat07G0023780 Phenylpropanoid C3'H/CYP98A high pass
Rsat07G0024860 Phenylpropanoid C3'H/CYP98A medium pass
Rsat07G0025360 Phenylpropanoid C3'H/CYP98A high pass
Rsat07G0025370 Phenylpropanoid C3'H/CYP98A high pass
Rsat07G0027190 Phenylpropanoid C3'H/CYP98A low borderline
Rsat07G0030810 Phenylpropanoid C3'H/CYP98A low borderline
Rsat07G0031080 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat08G0006290 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat08G0008010 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0008180 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0009460 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0010080 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0010650 Phenylpropanoid C3'H/CYP98A high pass
Rsat08G0010710 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0015350 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat08G0019170 Phenylpropanoid C3'H/CYP98A high pass
Rsat08G0019180 Phenylpropanoid C3'H/CYP98A medium pass
Rsat08G0019190 Phenylpropanoid C3'H/CYP98A high pass
Rsat08G0019210 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat08G0019650 Phenylpropanoid C3'H/CYP98A low borderline