PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat08G0019970 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0019980 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0019990 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0020000 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0025320 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0026660 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0027760 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0027770 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat08G0027780 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat08G0027790 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat08G0027800 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat08G0027810 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat08G0028470 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0028510 Phenylpropanoid C3'H/CYP98A low borderline
Rsat08G0033130 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0002610 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0003570 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0003600 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0003610 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0005720 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0008090 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0008100 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0008110 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0008140 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0008150 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0009070 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0011150 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0015720 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0016820 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0018610 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0025380 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0027080 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0030960 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0032050 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0032320 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat09G0035160 Phenylpropanoid C3'H/CYP98A low borderline
Rsat09G0038210 Phenylpropanoid C3'H/CYP98A low borderline
RsatScaffold16820003570 Phenylpropanoid C3'H/CYP98A low borderline
RsatScaffold22330005360 Phenylpropanoid C3'H/CYP98A low borderline
RsatScaffold24290006070 Phenylpropanoid C3'H/CYP98A low borderline
RsatScaffold2600007120 Phenylpropanoid C3'H/CYP98A low borderline
RsatScaffold26530007730 Phenylpropanoid C3'H/CYP98A medium borderline
RsatScaffold27160008020 Phenylpropanoid C3'H/CYP98A medium borderline
RsatScaffold38170012430 Phenylpropanoid C3'H/CYP98A medium borderline
RsatScaffold46150014290 Phenylpropanoid C3'H/CYP98A medium borderline
RsatScaffold5350015410 Phenylpropanoid C3'H/CYP98A medium borderline
RsatScaffold55440015750 Phenylpropanoid C3'H/CYP98A medium borderline
RsatScaffold7630018450 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0015240 Phenylpropanoid C4H/CYP73A low borderline
Rsat02G0001730 Phenylpropanoid C4H/CYP73A low borderline