PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
MCH99411.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI01678.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI02088.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI03149.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI03373.1[Trifolium Steroid DWF4/CYP90B1 medium borderline
MCI04406.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI05312.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI06229.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI08687.1[Trifolium Steroid DWF4/CYP90B1 medium borderline
MCI09753.1[Trifolium Steroid DWF4/CYP90B1 medium borderline
MCI14769.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI16229.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI18322.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI19757.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI21117.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI22833.1[Trifolium Steroid DWF4/CYP90B1 medium borderline
MCI27510.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI29677.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI30778.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI31819.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI32211.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI33063.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI33410.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI40882.1[Trifolium Steroid DWF4/CYP90B1 medium borderline
MCI44011.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI46730.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI65251.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI67935.1[Trifolium Steroid DWF4/CYP90B1 low borderline
MCI34578.1[Trifolium Steroid DWF5 low borderline
MCH79806.1[Trifolium Steroid DWF7 low borderline
MCH84572.1[Trifolium Steroid DWF7 medium pass
MCI21725.1[Trifolium Steroid FK medium pass
MCI23852.1[Trifolium Steroid HYD1 medium pass
MCI62836.1[Trifolium Steroid HYD1 medium pass
MCH84309.1[Trifolium Steroid ROT3/CYP90C1 medium borderline
MCH92231.1[Trifolium Steroid ROT3/CYP90C1 low borderline
MCI04682.1[Trifolium Steroid ROT3/CYP90C1 low borderline
MCI08130.1[Trifolium Steroid ROT3/CYP90C1 low borderline
MCI08272.1[Trifolium Steroid ROT3/CYP90C1 low borderline
MCI10951.1[Trifolium Steroid ROT3/CYP90C1 medium borderline
MCI12817.1[Trifolium Steroid ROT3/CYP90C1 low borderline
MCI22029.1[Trifolium Steroid ROT3/CYP90C1 medium borderline
MCI35845.1[Trifolium Steroid ROT3/CYP90C1 medium borderline
MCI45224.1[Trifolium Steroid ROT3/CYP90C1 medium borderline
MCI91366.1[Trifolium Steroid ROT3/CYP90C1 medium borderline
MCH88842.1[Trifolium Steroid SMO1/SMO2 medium pass
MCH94718.1[Trifolium Steroid SMO1/SMO2 medium pass
MCI10482.1[Trifolium Steroid SMO1/SMO2 low borderline
MCH79955.1[Trifolium Steroid SMT1/SMT2/SMT3 medium pass
MCH80423.1[Trifolium Steroid SMT1/SMT2/SMT3 medium pass