PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr6.3531 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr6.3535 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr6.3536 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr6.3537 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr6.3538 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr6.3560 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr6.3587 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr6.4157 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr6.4158 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr6.4159 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr6.4223 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr6.4224 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr6.4225 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr6.4229 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr6.4421 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr6.4492 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr7.1145 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr7.1147 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr7.1698 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr7.1735 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr7.1736 Alkaloid 7DLGT high pass
fragaria_mandshurica_evm.model.chr7.1737 Alkaloid 7DLGT high pass
fragaria_mandshurica_evm.model.chr7.1738 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr7.1739 Alkaloid 7DLGT high pass
fragaria_mandshurica_evm.model.chr7.1740 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr7.1785 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr7.2073 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr7.2074 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr7.2076 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr7.2561 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr7.2809 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr7.455 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr0.712 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr0.722 Alkaloid 7DLH low borderline
fragaria_mandshurica_evm.model.chr0.864 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr1.482 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr2.1727 Alkaloid 7DLH low borderline
fragaria_mandshurica_evm.model.chr2.3482 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr3.1394 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr3.1396 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr3.2470 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr3.2659 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr3.3349 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr3.3356 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr4.2421 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr5.260 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr6.2274 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr6.98 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr6.99 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr7.2483 Alkaloid 7DLH medium borderline