PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Garb01G0023700 Alkaloid 16OMT medium borderline
Garb01G0023730 Alkaloid 16OMT medium borderline
Garb01G0031510 Alkaloid 16OMT medium borderline
Garb03G0015740 Alkaloid 16OMT medium borderline
Garb03G0017330 Alkaloid 16OMT medium borderline
Garb03G0017340 Alkaloid 16OMT medium borderline
Garb05G0005850 Alkaloid 16OMT medium borderline
Garb05G0005860 Alkaloid 16OMT medium borderline
Garb05G0005890 Alkaloid 16OMT medium borderline
Garb06G0002580 Alkaloid 16OMT medium borderline
Garb06G0002590 Alkaloid 16OMT medium borderline
Garb06G0016370 Alkaloid 16OMT medium borderline
Garb08G0001570 Alkaloid 16OMT medium borderline
Garb08G0006290 Alkaloid 16OMT low borderline
Garb08G0022140 Alkaloid 16OMT medium borderline
Garb09G0003270 Alkaloid 16OMT medium borderline
Garb09G0003280 Alkaloid 16OMT medium borderline
Garb09G0011450 Alkaloid 16OMT low borderline
Garb09G0018440 Alkaloid 16OMT medium borderline
Garb09G0018460 Alkaloid 16OMT medium borderline
Garb09G0018470 Alkaloid 16OMT medium borderline
Garb09G0018490 Alkaloid 16OMT medium borderline
Garb10G0005210 Alkaloid 16OMT low borderline
Garb11G0027900 Alkaloid 16OMT medium borderline
Garb11G0027910 Alkaloid 16OMT medium borderline
Garb12G0015830 Alkaloid 16OMT medium borderline
Garb12G0019070 Alkaloid 16OMT medium borderline
Garb13G0023640 Alkaloid 16OMT medium borderline
Garb13G0023680 Alkaloid 16OMT medium borderline
Garb13G0023690 Alkaloid 16OMT medium borderline
Garb13G0023710 Alkaloid 16OMT medium borderline
Garb13G0025530 Alkaloid 16OMT medium borderline
Garb04G0020560 Alkaloid 6OMT_4OMT_SOMT medium pass
Garb05G0005870 Alkaloid 6OMT_4OMT_SOMT medium pass
Garb05G0005900 Alkaloid 6OMT_4OMT_SOMT medium pass
Garb09G0018480 Alkaloid 6OMT_4OMT_SOMT medium borderline
Garb01G0005960 Alkaloid 7DLGT medium pass
Garb01G0007050 Alkaloid 7DLGT medium pass
Garb01G0010770 Alkaloid 7DLGT medium pass
Garb01G0010790 Alkaloid 7DLGT low borderline
Garb01G0010800 Alkaloid 7DLGT low borderline
Garb01G0012490 Alkaloid 7DLGT low borderline
Garb01G0019550 Alkaloid 7DLGT low borderline
Garb01G0020140 Alkaloid 7DLGT medium pass
Garb01G0020160 Alkaloid 7DLGT high pass
Garb01G0020170 Alkaloid 7DLGT high pass
Garb01G0020230 Alkaloid 7DLGT medium pass
Garb01G0020240 Alkaloid 7DLGT medium pass
Garb01G0024190 Alkaloid 7DLGT low borderline
Garb01G0026350 Alkaloid 7DLGT medium pass