PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
Garb01G0015520 Flavonoid IFR high pass
Garb01G0028480 Flavonoid IFR high pass
Garb01G0029840 Flavonoid IFR medium pass
Garb02G0012460 Flavonoid IFR low borderline
Garb02G0012470 Flavonoid IFR low borderline
Garb03G0010830 Flavonoid IFR low borderline
Garb03G0027170 Flavonoid IFR high pass
Garb03G0027190 Flavonoid IFR high pass
Garb04G0006590 Flavonoid IFR low borderline
Garb04G0008660 Flavonoid IFR low borderline
Garb04G0019400 Flavonoid IFR low borderline
Garb04G0031120 Flavonoid IFR low borderline
Garb05G0001490 Flavonoid IFR high pass
Garb05G0002880 Flavonoid IFR low borderline
Garb05G0015290 Flavonoid IFR low borderline
Garb06G0001100 Flavonoid IFR high pass
Garb06G0029680 Flavonoid IFR low borderline
Garb06G0033000 Flavonoid IFR high pass
Garb07G0000440 Flavonoid IFR low borderline
Garb07G0002060 Flavonoid IFR high pass
Garb07G0012860 Flavonoid IFR low borderline
Garb07G0018250 Flavonoid IFR low borderline
Garb07G0023240 Flavonoid IFR high pass
Garb09G0019190 Flavonoid IFR low borderline
Garb10G0032460 Flavonoid IFR low borderline
Garb11G0023090 Flavonoid IFR low borderline
Garb11G0026550 Flavonoid IFR low borderline
Garb11G0027780 Flavonoid IFR low borderline
Garb12G0003300 Flavonoid IFR low borderline
Garb12G0015620 Flavonoid IFR low borderline
Garb12G0019540 Flavonoid IFR high pass
Garb12G0021470 Flavonoid IFR low borderline
Garb12G0026220 Flavonoid IFR low borderline
Garb13G0013220 Flavonoid IFR low borderline