PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
Garb01G0025850 Terpenoid TPS low borderline TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
Garb02G0002830 Terpenoid TPS medium pass TPS__00053__sp_A0A7G5KLV3_TPS4_CANOD
Garb03G0005030 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
Garb03G0005280 Terpenoid TPS medium pass TPS__00054__sp_A0A7J6HK32_TS9FN_CANSA
Garb04G0000540 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb04G0000550 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb04G0000560 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb04G0000600 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb04G0000610 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb04G0000630 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb04G0000640 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb04G0000650 Terpenoid TPS medium pass TPS__00046__sp_A0A4Y5QVX6_T20CT_CANSA
Garb04G0000660 Terpenoid TPS medium pass TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA
Garb04G0000670 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb04G0001930 Terpenoid TPS medium pass TPS__00054__sp_A0A7J6HK32_TS9FN_CANSA
Garb04G0006080 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
Garb04G0013090 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb04G0018640 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb04G0019880 Terpenoid TPS medium pass TPS__00046__sp_A0A4Y5QVX6_T20CT_CANSA
Garb04G0019890 Terpenoid TPS medium pass TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA
Garb04G0019910 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Garb04G0019920 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb04G0019950 Terpenoid TPS medium pass TPS__00054__sp_A0A7J6HK32_TS9FN_CANSA
Garb04G0026040 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Garb04G0026110 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb04G0028980 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb04G0028990 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb04G0033130 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Garb04G0033140 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Garb04G0033160 Terpenoid TPS medium pass TPS__00024__sp_A0A1V0QSG1_T13PK_CANSA
Garb04G0033180 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Garb04G0033190 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Garb04G0033200 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Garb04G0033220 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb04G0033230 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Garb04G0033240 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Garb04G0033720 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb07G0020280 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb07G0020290 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb07G0020320 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb07G0023120 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb07G0023130 Terpenoid TPS medium pass TPS__00061__sp_B9SBU9_TPS5_RICCO
Garb07G0023140 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Garb07G0023160 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
Garb07G0024190 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
Garb07G0035330 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Garb07G0035340 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
Garb09G0014710 Terpenoid TPS medium pass TPS__00005__sp_A0A140KFG9_TPS1_CAMBE
Garb09G0022350 Terpenoid TPS medium pass TPS__00148__sp_O64961_TPS9_SOLLC
Garb10G0003060 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU