PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Garb01G0015850 Alkaloid IO medium borderline
Garb01G0022310 Alkaloid IO medium borderline
Garb01G0029030 Alkaloid IO medium borderline
Garb01G0031040 Alkaloid IO low borderline
Garb02G0001010 Alkaloid IO medium borderline
Garb02G0003480 Alkaloid IO medium borderline
Garb04G0000450 Alkaloid IO medium borderline
Garb04G0007040 Alkaloid IO medium borderline
Garb04G0009230 Alkaloid IO medium borderline
Garb04G0022920 Alkaloid IO low borderline
Garb04G0024910 Alkaloid IO medium borderline
Garb04G0031960 Alkaloid IO medium borderline
Garb04G0031980 Alkaloid IO medium borderline
Garb05G0009350 Alkaloid IO medium borderline
Garb06G0008510 Alkaloid IO low borderline
Garb06G0008540 Alkaloid IO low borderline
Garb06G0033100 Alkaloid IO medium borderline
Garb06G0033110 Alkaloid IO medium borderline
Garb07G0002690 Alkaloid IO medium borderline
Garb07G0008310 Alkaloid IO low borderline
Garb07G0024960 Alkaloid IO low borderline
Garb07G0033180 Alkaloid IO medium pass
Garb08G0002250 Alkaloid IO medium borderline
Garb08G0015660 Alkaloid IO low borderline
Garb09G0000150 Alkaloid IO medium borderline
Garb10G0001470 Alkaloid IO low borderline
Garb10G0023040 Alkaloid IO medium borderline
Garb10G0034810 Alkaloid IO medium borderline
Garb11G0000840 Alkaloid IO medium borderline
Garb11G0025770 Alkaloid IO medium pass
Garb11G0030990 Alkaloid IO medium borderline
Garb12G0026660 Alkaloid IO medium borderline
Garb12G0026670 Alkaloid IO medium borderline
Garb13G0013810 Alkaloid IO medium borderline
Garb13G0022430 Alkaloid IO medium borderline
Garb13G0022440 Alkaloid IO medium borderline