PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Garb01G0031050 Flavonoid C4H low borderline
Garb03G0004310 Flavonoid C4H low borderline
Garb03G0004610 Flavonoid C4H medium pass
Garb05G0011990 Flavonoid C4H medium borderline
Garb05G0012020 Flavonoid C4H medium borderline
Garb05G0012030 Flavonoid C4H medium borderline
Garb05G0012070 Flavonoid C4H medium borderline
Garb05G0012100 Flavonoid C4H low borderline
Garb05G0016150 Flavonoid C4H medium borderline
Garb05G0016160 Flavonoid C4H medium borderline
Garb05G0016180 Flavonoid C4H medium pass
Garb05G0016190 Flavonoid C4H medium borderline
Garb05G0017840 Flavonoid C4H low borderline
Garb06G0013730 Flavonoid C4H low borderline
Garb07G0028520 Flavonoid C4H medium borderline
Garb07G0030840 Flavonoid C4H low borderline
Garb08G0016670 Flavonoid C4H low borderline
Garb09G0000800 Flavonoid C4H medium borderline
Garb09G0018300 Flavonoid C4H medium borderline
Garb11G0003650 Flavonoid C4H low borderline
Garb13G0002850 Flavonoid C4H medium borderline
Garb13G0011110 Flavonoid C4H medium borderline
Garb13G0011610 Flavonoid C4H medium borderline
Garb13G0011620 Flavonoid C4H medium borderline
Garb13G0033360 Flavonoid C4H medium borderline
Garb01G0003290 Rosmarinic Acid C4H low borderline
Garb01G0003300 Rosmarinic Acid C4H low borderline
Garb01G0004460 Rosmarinic Acid C4H low borderline
Garb01G0007000 Rosmarinic Acid C4H low borderline
Garb01G0008160 Rosmarinic Acid C4H low borderline
Garb01G0011350 Rosmarinic Acid C4H low borderline
Garb01G0013420 Rosmarinic Acid C4H medium pass
Garb01G0013440 Rosmarinic Acid C4H low borderline
Garb01G0013450 Rosmarinic Acid C4H medium pass
Garb01G0013460 Rosmarinic Acid C4H low borderline
Garb01G0014320 Rosmarinic Acid C4H low borderline
Garb01G0015850 Rosmarinic Acid C4H low borderline
Garb01G0015860 Rosmarinic Acid C4H low borderline
Garb01G0015890 Rosmarinic Acid C4H low borderline
Garb01G0017310 Rosmarinic Acid C4H low borderline
Garb01G0017320 Rosmarinic Acid C4H low borderline
Garb01G0017770 Rosmarinic Acid C4H low borderline
Garb01G0018960 Rosmarinic Acid C4H low borderline
Garb01G0019770 Rosmarinic Acid C4H low borderline
Garb01G0022290 Rosmarinic Acid C4H medium pass
Garb01G0022300 Rosmarinic Acid C4H low borderline
Garb01G0022310 Rosmarinic Acid C4H low borderline
Garb01G0022320 Rosmarinic Acid C4H low borderline
Garb01G0025450 Rosmarinic Acid C4H medium pass
Garb01G0025470 Rosmarinic Acid C4H medium pass