PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status
Garb01G0006300 Alkaloid NCS medium borderline
Garb01G0030900 Alkaloid NCS medium borderline
Garb01G0030910 Alkaloid NCS medium borderline
Garb02G0010390 Alkaloid NCS medium borderline
Garb02G0017320 Alkaloid NCS medium pass
Garb03G0003250 Alkaloid NCS medium borderline
Garb03G0006330 Alkaloid NCS medium borderline
Garb03G0026210 Alkaloid NCS medium borderline
Garb03G0026400 Alkaloid NCS medium borderline
Garb04G0013400 Alkaloid NCS low borderline
Garb04G0020090 Alkaloid NCS medium pass
Garb05G0012440 Alkaloid NCS medium borderline
Garb06G0013470 Alkaloid NCS medium borderline
Garb06G0013480 Alkaloid NCS medium borderline
Garb06G0013520 Alkaloid NCS medium borderline
Garb06G0013550 Alkaloid NCS medium borderline
Garb07G0024860 Alkaloid NCS medium pass
Garb07G0024870 Alkaloid NCS medium pass
Garb08G0000650 Alkaloid NCS medium borderline
Garb08G0021480 Alkaloid NCS medium borderline
Garb09G0006400 Alkaloid NCS medium borderline
Garb09G0017020 Alkaloid NCS medium borderline
Garb09G0022240 Alkaloid NCS medium borderline
Garb10G0011450 Alkaloid NCS medium borderline
Garb10G0038140 Alkaloid NCS medium pass
Garb10G0038160 Alkaloid NCS medium pass
Garb10G0038170 Alkaloid NCS medium pass
Garb10G0038180 Alkaloid NCS medium pass
Garb11G0013960 Alkaloid NCS medium borderline
Garb12G0029800 Alkaloid NCS medium borderline
Garb12G0029810 Alkaloid NCS medium borderline
Garb12G0029820 Alkaloid NCS medium borderline
Garb13G0019510 Alkaloid NCS medium borderline