PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Garb01G0025640 Alkaloid PYKS low borderline
Garb01G0028050 Alkaloid PYKS low borderline
Garb03G0006300 Alkaloid PYKS low borderline
Garb03G0015910 Alkaloid PYKS low borderline
Garb05G0001450 Alkaloid PYKS low borderline
Garb05G0009660 Alkaloid PYKS low borderline
Garb05G0016230 Alkaloid PYKS high pass
Garb06G0024000 Alkaloid PYKS low borderline
Garb06G0025080 Alkaloid PYKS high pass
Garb07G0011010 Alkaloid PYKS low borderline
Garb07G0011020 Alkaloid PYKS low borderline
Garb07G0011030 Alkaloid PYKS low borderline
Garb07G0012150 Alkaloid PYKS high pass
Garb07G0012300 Alkaloid PYKS medium pass
Garb07G0012310 Alkaloid PYKS high pass
Garb07G0012320 Alkaloid PYKS medium pass
Garb07G0026930 Alkaloid PYKS low borderline
Garb07G0027720 Alkaloid PYKS low borderline
Garb08G0002760 Alkaloid PYKS low borderline
Garb08G0017710 Alkaloid PYKS low borderline
Garb08G0020240 Alkaloid PYKS low borderline
Garb08G0023180 Alkaloid PYKS low borderline
Garb09G0006620 Alkaloid PYKS high pass
Garb09G0006630 Alkaloid PYKS high pass
Garb09G0021010 Alkaloid PYKS low borderline
Garb09G0021020 Alkaloid PYKS low borderline
Garb10G0000530 Alkaloid PYKS low borderline
Garb10G0003040 Alkaloid PYKS high pass
Garb10G0013070 Alkaloid PYKS low borderline
Garb10G0031930 Alkaloid PYKS low borderline
Garb11G0015240 Alkaloid PYKS high pass
Garb11G0018190 Alkaloid PYKS low borderline
Garb11G0018610 Alkaloid PYKS low borderline
Garb11G0021510 Alkaloid PYKS low borderline
Garb11G0032630 Alkaloid PYKS high pass
Garb11G0034400 Alkaloid PYKS low borderline
Garb12G0003550 Alkaloid PYKS low borderline
Garb13G0006460 Alkaloid PYKS low borderline
Garb13G0020250 Alkaloid PYKS low borderline