PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TAT
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Gene Pathway Family Confidence Status Best Target
Garb03G0003200 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb03G0009930 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb04G0027370 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb05G0005440 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Garb05G0005450 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Garb06G0001410 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb06G0010810 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb06G0012490 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb07G0031140 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb07G0031180 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb09G0002090 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb09G0002100 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb09G0012440 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb09G0020860 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb10G0017940 Rosmarinic Acid TAT medium pass TAT__00002__sp_Q9C969_ISS1_ARATH
Garb11G0005930 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb12G0003950 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb12G0005520 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb12G0027380 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb13G0026590 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Garb13G0027380 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb13G0027410 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Garb13G0033080 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH