PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Garb02G0011600 Alkaloid PMT low borderline
Garb03G0009710 Alkaloid PMT low borderline
Garb03G0026970 Alkaloid PMT medium borderline
Garb04G0007070 Alkaloid PMT medium pass
Garb04G0007770 Alkaloid PMT low borderline
Garb04G0011180 Alkaloid PMT low borderline
Garb04G0011240 Alkaloid PMT medium pass
Garb04G0034650 Alkaloid PMT medium pass
Garb05G0000180 Alkaloid PMT medium borderline
Garb06G0005120 Alkaloid PMT medium borderline
Garb08G0010620 Alkaloid PMT low borderline
Garb08G0021870 Alkaloid PMT medium borderline
Garb09G0009850 Alkaloid PMT medium pass
Garb10G0007660 Alkaloid PMT low borderline
Garb10G0032570 Alkaloid PMT low borderline
Garb11G0031820 Alkaloid PMT low borderline
Garb12G0013530 Alkaloid PMT medium pass
Garb12G0017610 Alkaloid PMT low borderline
Garb13G0005070 Alkaloid PMT low borderline
Garb13G0005090 Alkaloid PMT low borderline
Garb13G0026340 Alkaloid PMT medium pass
Garb13G0026350 Alkaloid PMT medium pass