Gossypium arboreum (gossypium_arboreum)
Imported from atlas release summary for Gossypium arboreum.
2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2044
Candidate Genes
C4H
7.23%
C3'H/CYP98A
6.0%
BAHD
4.87%
IFS
3.92%
CYP76
3.81%
UGT
3.66%
T3O
3.56%
F3H
3.48%
Other Families
63.47%
More Families (98)
POD
180
3.46%
4CL
174
3.35%
7DLGT
171
3.29%
UFGT
162
3.12%
BR6OX2/CYP85A2
107
2.06%
CODM/T6ODM
101
1.94%
DWF4/CYP90B1
101
1.94%
NMT
100
1.92%
F3'H/CYP75B
98
1.89%
STR
92
1.77%
TPS
86
1.65%
H6H
85
1.64%
CAD
81
1.56%
CYP90D1
74
1.42%
CYP71
74
1.42%
GES
73
1.4%
LAC
72
1.39%
TRI/TRII
65
1.25%
CAS
65
1.25%
7DLH
54
1.04%
CSE
51
0.98%
SMT1/SMT2/SMT3
51
0.98%
GS
49
0.94%
BBE
48
0.92%
HCT
48
0.92%
COMT
48
0.92%
G8O/G8H
42
0.81%
PYKS
39
0.75%
RAS
39
0.75%
IO
36
0.69%
F3'5'H/CYP75A
35
0.67%
F5H/CYP84A
35
0.67%
T16H
34
0.65%
FNS
34
0.65%
IFR
34
0.65%
NCS
33
0.63%
16OMT
32
0.62%
CCR
29
0.56%
SGD
27
0.52%
SLS
25
0.48%
ANR
24
0.46%
CYP51G1
24
0.46%
TAT
23
0.44%
BR6OX1/CYP85A1
23
0.44%
PMT
22
0.42%
COR
22
0.42%
PAL
21
0.4%
CPD/CYP90A1
20
0.38%
ROT3/CYP90C1
19
0.37%
8HGO
18
0.35%
DFR
17
0.33%
SQE
15
0.29%
TYDC_DDC
13
0.25%
ANS/LDOX
13
0.25%
GGPPS
13
0.25%
CYP719
12
0.23%
CHS
12
0.23%
CNMT
11
0.21%
LAMT
11
0.21%
HMGR
11
0.21%
CYP80B1
10
0.19%
SQS/FDFT1
9
0.17%
SMO1/SMO2
9
0.17%
HMGS
9
0.17%
FPPS
9
0.17%
MPO
8
0.15%
ISY
8
0.15%
CCoAOMT
8
0.15%
CPR
7
0.13%
AACT
7
0.13%
DXS
7
0.13%
TDC
6
0.12%
HPPR
6
0.12%
DET2
6
0.12%
XMT_MXMT_DXMT
5
0.1%
MVK
5
0.1%
MVD
5
0.1%
6OMT_4OMT_SOMT
4
0.08%
ADC
4
0.08%
CHI
4
0.08%
ODC
3
0.06%
FLS
3
0.06%
DWF1
3
0.06%
MCT/IspD
3
0.06%
HDR/IspH
3
0.06%
DXR
3
0.06%
CYP80F1
2
0.04%
DWF5
2
0.04%
MDS/IspF
2
0.04%
HDS/IspG
2
0.04%
GPPS
2
0.04%
DWF7
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
HYD1
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 612 | 21 | BAHD (203) | View species results |
| Alkaloid pathway | 464 | 25 | 7DLGT (81) | View species results |
| Phenylpropanoid pathway | 446 | 12 | POD (173) | View species results |
| Flavonoid pathway | 238 | 13 | UFGT (150) | View species results |
| Rosmarinic acid pathway | 159 | 7 | C4H (69) | View species results |
| Steroid pathway | 125 | 12 | CAS (59) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2100 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 340 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Garb01G0005500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb01G0005520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb01G0005530 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb01G0008500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb01G0010480 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb01G0013220 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Garb01G0013230 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Garb01G0013240 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Garb01G0019920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb01G0019930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb01G0020420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb01G0021320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb01G0031730 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Garb01G0031740 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Garb01G0036040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb02G0003400 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Garb02G0004420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb02G0006740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb02G0010420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb02G0013230 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb02G0016740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb02G0017590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb03G0002940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb03G0016770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb03G0020400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb03G0021060 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb04G0007190 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb04G0009450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb04G0021320 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb04G0025680 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Garb04G0029290 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb04G0031630 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb04G0032780 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Garb04G0034760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb04G0034770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb05G0009160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb05G0010180 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb05G0010190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb05G0013620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb05G0013630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb05G0013640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb06G0001250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb06G0019070 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Garb06G0027090 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb06G0032470 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb07G0004200 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb07G0007100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb07G0008710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb07G0020100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Garb07G0024810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |