PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
Garb01G0005340 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Garb01G0010960 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Garb01G0020940 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Garb01G0020950 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Garb01G0020960 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Garb01G0020970 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Garb01G0031720 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb01G0031760 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb01G0035950 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Garb02G0002940 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb02G0002950 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb02G0003160 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb03G0007940 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Garb03G0011990 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb03G0018960 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Garb03G0027300 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Garb04G0025820 Phenylpropanoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Garb05G0011300 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb05G0011320 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb05G0011330 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb05G0012990 Phenylpropanoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Garb05G0015880 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb06G0003210 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Garb06G0007150 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Garb06G0010700 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Garb07G0005390 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Garb07G0007340 Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Garb07G0009100 Phenylpropanoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Garb07G0009120 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Garb07G0009130 Phenylpropanoid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Garb07G0022250 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Garb07G0022260 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Garb08G0009510 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Garb08G0016820 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Garb08G0023080 Phenylpropanoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Garb08G0023650 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Garb08G0024750 Phenylpropanoid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Garb09G0002030 Phenylpropanoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Garb09G0015650 Phenylpropanoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Garb09G0026450 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb10G0003330 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Garb10G0003960 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Garb10G0004220 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Garb10G0011240 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Garb10G0031220 Phenylpropanoid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
Garb10G0036250 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Garb10G0037330 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Garb10G0037340 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Garb10G0038870 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Garb11G0001250 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY