PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
Garb11G0003480 Phenylpropanoid 4CL low borderline
Garb11G0004190 Phenylpropanoid 4CL medium pass
Garb11G0010760 Phenylpropanoid 4CL medium pass
Garb11G0029440 Phenylpropanoid 4CL low borderline
Garb12G0019210 Phenylpropanoid 4CL medium pass
Garb12G0020330 Phenylpropanoid 4CL low borderline
Garb12G0020790 Phenylpropanoid 4CL medium pass
Garb13G0020760 Phenylpropanoid 4CL medium pass
Garb01G0003150 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0003290 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0003300 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0004460 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0007000 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0008160 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0013420 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0013450 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0013460 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0014320 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0015850 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0015860 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0015890 Phenylpropanoid C3'H/CYP98A medium pass
Garb01G0017770 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0018960 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0020030 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0021210 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0022290 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0022310 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0022320 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0025450 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0025470 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0027830 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0028320 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0029030 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0031060 Phenylpropanoid C3'H/CYP98A medium borderline
Garb01G0032580 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0034500 Phenylpropanoid C3'H/CYP98A low borderline
Garb01G0035180 Phenylpropanoid C3'H/CYP98A low borderline
Garb02G0001010 Phenylpropanoid C3'H/CYP98A medium borderline
Garb02G0003460 Phenylpropanoid C3'H/CYP98A medium borderline
Garb02G0003470 Phenylpropanoid C3'H/CYP98A medium borderline
Garb02G0003480 Phenylpropanoid C3'H/CYP98A medium borderline
Garb02G0003770 Phenylpropanoid C3'H/CYP98A medium borderline
Garb02G0007300 Phenylpropanoid C3'H/CYP98A medium pass
Garb02G0007790 Phenylpropanoid C3'H/CYP98A low borderline
Garb02G0009130 Phenylpropanoid C3'H/CYP98A low borderline
Garb02G0010570 Phenylpropanoid C3'H/CYP98A low borderline
Garb02G0012100 Phenylpropanoid C3'H/CYP98A low borderline
Garb02G0015850 Phenylpropanoid C3'H/CYP98A medium pass
Garb03G0000770 Phenylpropanoid C3'H/CYP98A low borderline
Garb03G0003150 Phenylpropanoid C3'H/CYP98A low borderline