PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Garb10G0001400 Alkaloid NMT medium pass
Garb10G0002120 Alkaloid NMT medium borderline
Garb10G0003240 Alkaloid NMT low borderline
Garb10G0016070 Alkaloid NMT medium pass
Garb10G0020450 Alkaloid NMT medium borderline
Garb10G0020460 Alkaloid NMT medium borderline
Garb10G0024760 Alkaloid NMT low borderline
Garb10G0029650 Alkaloid NMT low borderline
Garb11G0004430 Alkaloid NMT medium pass
Garb11G0011310 Alkaloid NMT medium pass
Garb11G0012200 Alkaloid NMT medium pass
Garb11G0012480 Alkaloid NMT medium borderline
Garb11G0015760 Alkaloid NMT medium borderline
Garb11G0018260 Alkaloid NMT medium pass
Garb11G0031150 Alkaloid NMT medium borderline
Garb12G0004300 Alkaloid NMT medium pass
Garb12G0007980 Alkaloid NMT medium borderline
Garb12G0015290 Alkaloid NMT medium pass
Garb12G0015840 Alkaloid NMT medium pass
Garb12G0016510 Alkaloid NMT medium pass
Garb12G0024650 Alkaloid NMT medium borderline
Garb12G0030420 Alkaloid NMT low borderline
Garb12G0031920 Alkaloid NMT low borderline
Garb12G0032450 Alkaloid NMT medium pass
Garb13G0000180 Alkaloid NMT medium pass
Garb13G0003310 Alkaloid NMT medium pass
Garb13G0014770 Alkaloid NMT medium pass
Garb13G0018580 Alkaloid NMT low borderline
Garb13G0023620 Alkaloid NMT medium pass
Garb13G0023630 Alkaloid NMT medium borderline
Garb13G0023700 Alkaloid NMT medium pass
Garb13G0025540 Alkaloid NMT medium pass
Garb13G0025560 Alkaloid NMT medium pass
Garb13G0031850 Alkaloid NMT medium borderline
Garb04G0026600 Alkaloid ODC medium pass
Garb04G0026610 Alkaloid ODC medium pass
Garb07G0008600 Alkaloid ODC low borderline
Garb02G0011600 Alkaloid PMT low borderline
Garb03G0009710 Alkaloid PMT low borderline
Garb03G0026970 Alkaloid PMT medium borderline
Garb04G0007070 Alkaloid PMT medium pass
Garb04G0007770 Alkaloid PMT low borderline
Garb04G0011180 Alkaloid PMT low borderline
Garb04G0011240 Alkaloid PMT medium pass
Garb04G0034650 Alkaloid PMT medium pass
Garb05G0000180 Alkaloid PMT medium borderline
Garb06G0005120 Alkaloid PMT medium borderline
Garb08G0010620 Alkaloid PMT low borderline
Garb08G0021870 Alkaloid PMT medium borderline
Garb09G0009850 Alkaloid PMT medium pass