PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Garb02G0013240 Alkaloid SGD medium pass
Garb02G0013510 Alkaloid SGD medium pass
Garb02G0016980 Alkaloid SGD low borderline
Garb03G0007080 Alkaloid SGD medium pass
Garb03G0007260 Alkaloid SGD medium pass
Garb04G0025850 Alkaloid SGD medium pass
Garb04G0028560 Alkaloid SGD medium pass
Garb06G0004930 Alkaloid SGD medium pass
Garb06G0004950 Alkaloid SGD medium pass
Garb06G0004960 Alkaloid SGD medium pass
Garb06G0018630 Alkaloid SGD medium pass
Garb08G0027230 Alkaloid SGD medium pass
Garb08G0027240 Alkaloid SGD medium pass
Garb09G0020420 Alkaloid SGD low borderline
Garb09G0020430 Alkaloid SGD medium pass
Garb10G0009700 Alkaloid SGD medium pass
Garb11G0003980 Alkaloid SGD low borderline
Garb11G0022570 Alkaloid SGD medium pass
Garb13G0001600 Alkaloid SGD medium pass
Garb13G0007670 Alkaloid SGD medium pass
Garb13G0007680 Alkaloid SGD medium pass
Garb13G0007690 Alkaloid SGD medium pass
Garb13G0026990 Alkaloid SGD medium pass
Garb13G0027850 Alkaloid SGD medium pass
Garb13G0027860 Alkaloid SGD medium pass
Garb01G0007000 Alkaloid SLS medium borderline
Garb01G0014320 Alkaloid SLS medium borderline
Garb01G0017770 Alkaloid SLS medium borderline
Garb03G0003170 Alkaloid SLS low borderline
Garb03G0006960 Alkaloid SLS medium borderline
Garb04G0003840 Alkaloid SLS medium borderline
Garb05G0012010 Alkaloid SLS medium borderline
Garb05G0016140 Alkaloid SLS medium borderline
Garb06G0028600 Alkaloid SLS medium borderline
Garb07G0026490 Alkaloid SLS medium borderline
Garb07G0026510 Alkaloid SLS medium borderline
Garb07G0026520 Alkaloid SLS medium borderline
Garb07G0026530 Alkaloid SLS medium borderline
Garb08G0004980 Alkaloid SLS medium borderline
Garb08G0012430 Alkaloid SLS medium borderline
Garb09G0014730 Alkaloid SLS medium borderline
Garb09G0018450 Alkaloid SLS medium borderline
Garb10G0032060 Alkaloid SLS medium borderline
Garb11G0000210 Alkaloid SLS low borderline
Garb11G0018250 Alkaloid SLS medium borderline
Garb12G0024760 Alkaloid SLS medium borderline
Garb12G0024770 Alkaloid SLS medium borderline
Garb13G0010950 Alkaloid SLS medium borderline
Garb13G0011060 Alkaloid SLS medium pass
Garb13G0011600 Alkaloid SLS medium pass