PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Garb09G0000220 Alkaloid TRI/TRII low borderline
Garb09G0016460 Alkaloid TRI/TRII medium pass
Garb09G0016470 Alkaloid TRI/TRII medium pass
Garb10G0000460 Alkaloid TRI/TRII low borderline
Garb10G0003470 Alkaloid TRI/TRII medium pass
Garb10G0008220 Alkaloid TRI/TRII medium pass
Garb10G0034120 Alkaloid TRI/TRII low borderline
Garb11G0018910 Alkaloid TRI/TRII medium pass
Garb11G0025780 Alkaloid TRI/TRII medium pass
Garb11G0025810 Alkaloid TRI/TRII medium pass
Garb11G0026460 Alkaloid TRI/TRII medium pass
Garb11G0026800 Alkaloid TRI/TRII low borderline
Garb11G0030930 Alkaloid TRI/TRII medium pass
Garb11G0030940 Alkaloid TRI/TRII medium pass
Garb11G0030950 Alkaloid TRI/TRII medium pass
Garb11G0030960 Alkaloid TRI/TRII medium pass
Garb11G0030970 Alkaloid TRI/TRII medium pass
Garb11G0030980 Alkaloid TRI/TRII medium pass
Garb12G0000750 Alkaloid TRI/TRII medium pass
Garb12G0000760 Alkaloid TRI/TRII medium pass
Garb12G0023950 Alkaloid TRI/TRII low borderline
Garb12G0029780 Alkaloid TRI/TRII medium pass
Garb13G0000820 Alkaloid TRI/TRII medium pass
Garb13G0001250 Alkaloid TRI/TRII medium pass
Garb13G0007220 Alkaloid TRI/TRII medium pass
Garb13G0007230 Alkaloid TRI/TRII medium pass
Garb13G0007240 Alkaloid TRI/TRII medium pass
Garb13G0012140 Alkaloid TRI/TRII low borderline
Garb13G0017640 Alkaloid TRI/TRII medium pass
Garb13G0031570 Alkaloid TRI/TRII medium pass
Garb13G0031580 Alkaloid TRI/TRII medium pass
Garb13G0031590 Alkaloid TRI/TRII medium pass
Garb01G0025530 Alkaloid TYDC_DDC medium borderline
Garb01G0025540 Alkaloid TYDC_DDC medium borderline
Garb01G0027110 Alkaloid TYDC_DDC medium borderline
Garb01G0027310 Alkaloid TYDC_DDC medium borderline
Garb07G0009740 Alkaloid TYDC_DDC medium borderline
Garb07G0009750 Alkaloid TYDC_DDC medium borderline
Garb09G0011960 Alkaloid TYDC_DDC medium borderline
Garb09G0022860 Alkaloid TYDC_DDC medium borderline
Garb09G0025250 Alkaloid TYDC_DDC low borderline
Garb12G0019700 Alkaloid TYDC_DDC medium borderline
Garb13G0005110 Alkaloid TYDC_DDC medium borderline
Garb13G0005150 Alkaloid TYDC_DDC medium borderline
Garb13G0025010 Alkaloid TYDC_DDC medium borderline
Garb05G0001560 Alkaloid XMT_MXMT_DXMT medium borderline
Garb11G0032790 Alkaloid XMT_MXMT_DXMT medium borderline
Garb11G0032800 Alkaloid XMT_MXMT_DXMT medium borderline
Garb11G0032810 Alkaloid XMT_MXMT_DXMT medium borderline
Garb11G0032820 Alkaloid XMT_MXMT_DXMT medium borderline