PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Garb06G0010040 Alkaloid 7DLGT medium pass
Garb06G0011450 Alkaloid 7DLGT low borderline
Garb06G0012850 Alkaloid 7DLGT low borderline
Garb06G0015170 Alkaloid 7DLGT high pass
Garb06G0015180 Alkaloid 7DLGT medium pass
Garb06G0016940 Alkaloid 7DLGT low borderline
Garb06G0017220 Alkaloid 7DLGT low borderline
Garb06G0018960 Alkaloid 7DLGT medium pass
Garb06G0019460 Alkaloid 7DLGT low borderline
Garb06G0025800 Alkaloid 7DLGT medium pass
Garb06G0026540 Alkaloid 7DLGT low borderline
Garb06G0026560 Alkaloid 7DLGT low borderline
Garb07G0000880 Alkaloid 7DLGT medium pass
Garb07G0003150 Alkaloid 7DLGT low borderline
Garb07G0003190 Alkaloid 7DLGT low borderline
Garb07G0004960 Alkaloid 7DLGT high pass
Garb07G0013690 Alkaloid 7DLGT medium pass
Garb07G0015530 Alkaloid 7DLGT high pass
Garb07G0016980 Alkaloid 7DLGT medium pass
Garb07G0017000 Alkaloid 7DLGT low borderline
Garb07G0017020 Alkaloid 7DLGT medium pass
Garb07G0021790 Alkaloid 7DLGT low borderline
Garb07G0022320 Alkaloid 7DLGT medium pass
Garb07G0025560 Alkaloid 7DLGT low borderline
Garb07G0028550 Alkaloid 7DLGT medium pass
Garb07G0028560 Alkaloid 7DLGT low borderline
Garb07G0028570 Alkaloid 7DLGT low borderline
Garb07G0032820 Alkaloid 7DLGT low borderline
Garb07G0032830 Alkaloid 7DLGT low borderline
Garb07G0032840 Alkaloid 7DLGT low borderline
Garb07G0033280 Alkaloid 7DLGT low borderline
Garb07G0034540 Alkaloid 7DLGT low borderline
Garb08G0005240 Alkaloid 7DLGT low borderline
Garb08G0005580 Alkaloid 7DLGT medium pass
Garb08G0006270 Alkaloid 7DLGT low borderline
Garb08G0012530 Alkaloid 7DLGT medium pass
Garb08G0012610 Alkaloid 7DLGT low borderline
Garb08G0012620 Alkaloid 7DLGT low borderline
Garb08G0012630 Alkaloid 7DLGT low borderline
Garb08G0012640 Alkaloid 7DLGT low borderline
Garb08G0013390 Alkaloid 7DLGT low borderline
Garb08G0013800 Alkaloid 7DLGT low borderline
Garb08G0013810 Alkaloid 7DLGT low borderline
Garb08G0013820 Alkaloid 7DLGT medium pass
Garb08G0013830 Alkaloid 7DLGT low borderline
Garb08G0015670 Alkaloid 7DLGT low borderline
Garb08G0018280 Alkaloid 7DLGT low borderline
Garb08G0018290 Alkaloid 7DLGT low borderline
Garb08G0020910 Alkaloid 7DLGT low borderline
Garb08G0021090 Alkaloid 7DLGT medium pass