PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Garb07G0022260 Rosmarinic Acid 4CL medium pass
Garb08G0009510 Rosmarinic Acid 4CL low borderline
Garb08G0016820 Rosmarinic Acid 4CL low borderline
Garb08G0023080 Rosmarinic Acid 4CL medium pass
Garb08G0023650 Rosmarinic Acid 4CL medium pass
Garb08G0024750 Rosmarinic Acid 4CL medium pass
Garb09G0002030 Rosmarinic Acid 4CL low borderline
Garb09G0015650 Rosmarinic Acid 4CL medium pass
Garb09G0026450 Rosmarinic Acid 4CL medium pass
Garb10G0003330 Rosmarinic Acid 4CL medium pass
Garb10G0003960 Rosmarinic Acid 4CL medium pass
Garb10G0004220 Rosmarinic Acid 4CL low borderline
Garb10G0011240 Rosmarinic Acid 4CL medium pass
Garb10G0031220 Rosmarinic Acid 4CL low borderline
Garb10G0036250 Rosmarinic Acid 4CL low borderline
Garb10G0037330 Rosmarinic Acid 4CL medium pass
Garb10G0037340 Rosmarinic Acid 4CL medium pass
Garb10G0038870 Rosmarinic Acid 4CL medium pass
Garb11G0001250 Rosmarinic Acid 4CL medium pass
Garb11G0003480 Rosmarinic Acid 4CL low borderline
Garb11G0004190 Rosmarinic Acid 4CL medium pass
Garb11G0010760 Rosmarinic Acid 4CL medium pass
Garb11G0029440 Rosmarinic Acid 4CL low borderline
Garb12G0019210 Rosmarinic Acid 4CL medium pass
Garb12G0020330 Rosmarinic Acid 4CL low borderline
Garb12G0020790 Rosmarinic Acid 4CL medium pass
Garb13G0020760 Rosmarinic Acid 4CL medium pass
Garb01G0003290 Rosmarinic Acid C4H low borderline
Garb01G0003300 Rosmarinic Acid C4H low borderline
Garb01G0004460 Rosmarinic Acid C4H low borderline
Garb01G0007000 Rosmarinic Acid C4H low borderline
Garb01G0008160 Rosmarinic Acid C4H low borderline
Garb01G0011350 Rosmarinic Acid C4H low borderline
Garb01G0013420 Rosmarinic Acid C4H medium pass
Garb01G0013440 Rosmarinic Acid C4H low borderline
Garb01G0013450 Rosmarinic Acid C4H medium pass
Garb01G0013460 Rosmarinic Acid C4H low borderline
Garb01G0014320 Rosmarinic Acid C4H low borderline
Garb01G0015850 Rosmarinic Acid C4H low borderline
Garb01G0015860 Rosmarinic Acid C4H low borderline
Garb01G0015890 Rosmarinic Acid C4H low borderline
Garb01G0017310 Rosmarinic Acid C4H low borderline
Garb01G0017320 Rosmarinic Acid C4H low borderline
Garb01G0017770 Rosmarinic Acid C4H low borderline
Garb01G0018960 Rosmarinic Acid C4H low borderline
Garb01G0019770 Rosmarinic Acid C4H low borderline
Garb01G0022290 Rosmarinic Acid C4H medium pass
Garb01G0022300 Rosmarinic Acid C4H low borderline
Garb01G0022310 Rosmarinic Acid C4H low borderline
Garb01G0022320 Rosmarinic Acid C4H low borderline