PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Garb12G0017610 Rosmarinic Acid RAS low borderline
Garb12G0022000 Rosmarinic Acid RAS low borderline
Garb12G0022830 Rosmarinic Acid RAS low borderline
Garb12G0024610 Rosmarinic Acid RAS low borderline
Garb13G0005090 Rosmarinic Acid RAS low borderline
Garb13G0008990 Rosmarinic Acid RAS low borderline
Garb13G0026340 Rosmarinic Acid RAS medium pass
Garb13G0026350 Rosmarinic Acid RAS medium pass
Garb03G0003200 Rosmarinic Acid TAT medium pass
Garb03G0009930 Rosmarinic Acid TAT low borderline
Garb04G0027370 Rosmarinic Acid TAT medium pass
Garb05G0005440 Rosmarinic Acid TAT medium pass
Garb05G0005450 Rosmarinic Acid TAT medium pass
Garb06G0001410 Rosmarinic Acid TAT low borderline
Garb06G0010810 Rosmarinic Acid TAT medium pass
Garb06G0012490 Rosmarinic Acid TAT low borderline
Garb07G0031140 Rosmarinic Acid TAT medium pass
Garb07G0031180 Rosmarinic Acid TAT medium pass
Garb09G0002090 Rosmarinic Acid TAT low borderline
Garb09G0002100 Rosmarinic Acid TAT low borderline
Garb09G0012440 Rosmarinic Acid TAT medium pass
Garb09G0020860 Rosmarinic Acid TAT low borderline
Garb10G0017940 Rosmarinic Acid TAT medium pass
Garb11G0005930 Rosmarinic Acid TAT low borderline
Garb12G0003950 Rosmarinic Acid TAT low borderline
Garb12G0005520 Rosmarinic Acid TAT low borderline
Garb12G0027380 Rosmarinic Acid TAT medium pass
Garb13G0026590 Rosmarinic Acid TAT medium pass
Garb13G0027380 Rosmarinic Acid TAT medium pass
Garb13G0027410 Rosmarinic Acid TAT medium pass
Garb13G0033080 Rosmarinic Acid TAT medium pass
Garb01G0021210 Steroid BR6OX1/CYP85A1 medium borderline
Garb01G0029030 Steroid BR6OX1/CYP85A1 medium borderline
Garb04G0007000 Steroid BR6OX1/CYP85A1 low borderline
Garb05G0000860 Steroid BR6OX1/CYP85A1 medium borderline
Garb06G0001330 Steroid BR6OX1/CYP85A1 medium borderline
Garb06G0018010 Steroid BR6OX1/CYP85A1 medium borderline
Garb06G0020570 Steroid BR6OX1/CYP85A1 medium borderline
Garb06G0033100 Steroid BR6OX1/CYP85A1 medium borderline
Garb06G0033130 Steroid BR6OX1/CYP85A1 medium borderline
Garb07G0004100 Steroid BR6OX1/CYP85A1 medium borderline
Garb09G0014730 Steroid BR6OX1/CYP85A1 medium borderline
Garb10G0005220 Steroid BR6OX1/CYP85A1 medium borderline
Garb10G0014520 Steroid BR6OX1/CYP85A1 medium borderline
Garb10G0014580 Steroid BR6OX1/CYP85A1 medium borderline
Garb11G0016750 Steroid BR6OX1/CYP85A1 medium borderline
Garb11G0016760 Steroid BR6OX1/CYP85A1 medium borderline
Garb12G0006130 Steroid BR6OX1/CYP85A1 medium borderline
Garb12G0024660 Steroid BR6OX1/CYP85A1 medium borderline
Garb13G0003170 Steroid BR6OX1/CYP85A1 medium borderline