PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Garb04G0029960 Terpenoid HMGS medium pass
Garb06G0009810 Terpenoid HMGS medium pass
Garb07G0011550 Terpenoid HMGS high pass
Garb07G0014640 Terpenoid HMGS high pass
Garb07G0018930 Terpenoid HMGS medium pass
Garb03G0013250 Terpenoid IDI medium pass
Garb01G0018060 Terpenoid MCT/IspD high pass
Garb06G0000630 Terpenoid MCT/IspD low borderline
Garb06G0006510 Terpenoid MCT/IspD low borderline
Garb02G0000100 Terpenoid MDS/IspF low borderline
Garb03G0002900 Terpenoid MDS/IspF high pass
Garb09G0005590 Terpenoid MVD low borderline
Garb10G0008060 Terpenoid MVD low borderline
Garb13G0014890 Terpenoid MVD low borderline
Garb13G0017960 Terpenoid MVD medium pass
Garb13G0017980 Terpenoid MVD medium pass
Garb04G0010740 Terpenoid MVK medium pass
Garb04G0025860 Terpenoid MVK medium pass
Garb05G0006310 Terpenoid MVK low borderline
Garb07G0029710 Terpenoid MVK low borderline
Garb11G0010160 Terpenoid MVK low borderline
Garb06G0012970 Terpenoid PMK medium pass
Garb01G0025850 Terpenoid TPS low borderline
Garb02G0002830 Terpenoid TPS medium pass
Garb03G0005030 Terpenoid TPS medium pass
Garb03G0005280 Terpenoid TPS medium pass
Garb04G0000540 Terpenoid TPS medium pass
Garb04G0000550 Terpenoid TPS medium pass
Garb04G0000560 Terpenoid TPS medium pass
Garb04G0000600 Terpenoid TPS medium pass
Garb04G0000610 Terpenoid TPS medium pass
Garb04G0000630 Terpenoid TPS medium pass
Garb04G0000640 Terpenoid TPS medium pass
Garb04G0000650 Terpenoid TPS medium pass
Garb04G0000660 Terpenoid TPS medium pass
Garb04G0000670 Terpenoid TPS medium pass
Garb04G0001930 Terpenoid TPS medium pass
Garb04G0006080 Terpenoid TPS medium pass
Garb04G0013090 Terpenoid TPS medium pass
Garb04G0018640 Terpenoid TPS medium pass
Garb04G0019880 Terpenoid TPS medium pass
Garb04G0019890 Terpenoid TPS medium pass
Garb04G0019910 Terpenoid TPS medium pass
Garb04G0019920 Terpenoid TPS medium pass
Garb04G0019950 Terpenoid TPS medium pass
Garb04G0026040 Terpenoid TPS medium pass
Garb04G0026110 Terpenoid TPS medium pass
Garb04G0028980 Terpenoid TPS medium pass
Garb04G0028990 Terpenoid TPS medium pass
Garb04G0033130 Terpenoid TPS medium pass