PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
OBART09G17380.1 Steroid BR6OX2/CYP85A2 low borderline
OBART09G17380.2 Steroid BR6OX2/CYP85A2 low borderline
OBART10G03440.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G03460.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G03850.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G04360.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G04820.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G04830.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G11340.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G13830.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G15460.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G16350.1 Steroid BR6OX2/CYP85A2 low borderline
OBART10G16370.1 Steroid BR6OX2/CYP85A2 low borderline
OBART11G02310.1 Steroid BR6OX2/CYP85A2 low borderline
OBART11G13010.1 Steroid BR6OX2/CYP85A2 low borderline
OBART11G13110.1 Steroid BR6OX2/CYP85A2 low borderline
OBART11G13530.1 Steroid BR6OX2/CYP85A2 low borderline
OBART11G13630.1 Steroid BR6OX2/CYP85A2 medium borderline
OBART12G02040.1 Steroid BR6OX2/CYP85A2 low borderline
OBART01G22460.1 Steroid CAS low borderline
OBART01G34940.1 Steroid CAS medium pass
OBART01G45930.1 Steroid CAS medium pass
OBART02G03270.1 Steroid CAS medium pass
OBART02G03270.2 Steroid CAS medium pass
OBART02G03270.3 Steroid CAS medium pass
OBART02G03290.1 Steroid CAS medium pass
OBART02G03290.2 Steroid CAS medium pass
OBART02G03330.1 Steroid CAS low borderline
OBART02G09110.1 Steroid CAS medium pass
OBART02G12200.1 Steroid CAS low borderline
OBART02G12250.1 Steroid CAS medium pass
OBART02G12250.2 Steroid CAS medium pass
OBART02G21280.1 Steroid CAS medium pass
OBART02G21300.1 Steroid CAS medium pass
OBART02G21300.2 Steroid CAS medium pass
OBART02G21300.5 Steroid CAS medium pass
OBART02G21300.6 Steroid CAS medium pass
OBART02G21320.1 Steroid CAS medium pass
OBART02G21320.2 Steroid CAS low borderline
OBART02G21320.5 Steroid CAS medium pass
OBART02G31140.1 Steroid CAS medium pass
OBART03G17260.1 Steroid CAS low borderline
OBART03G18120.1 Steroid CAS low borderline
OBART03G18130.1 Steroid CAS low borderline
OBART03G18140.1 Steroid CAS low borderline
OBART03G18170.1 Steroid CAS low borderline
OBART03G18180.1 Steroid CAS low borderline
OBART03G34110.1 Steroid CAS medium pass
OBART04G02290.1 Steroid CAS medium pass
OBART04G02860.1 Steroid CAS medium pass