PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status
ONIVA01G26890.1 Rosmarinic Acid 4CL low borderline
ONIVA01G28390.1 Rosmarinic Acid 4CL low borderline
ONIVA01G30470.1 Rosmarinic Acid 4CL low borderline
ONIVA01G36120.1 Rosmarinic Acid 4CL low borderline
ONIVA01G36120.2 Rosmarinic Acid 4CL low borderline
ONIVA01G45790.1 Rosmarinic Acid 4CL low borderline
ONIVA01G45790.2 Rosmarinic Acid 4CL low borderline
ONIVA01G45790.3 Rosmarinic Acid 4CL medium pass
ONIVA01G45790.4 Rosmarinic Acid 4CL medium pass
ONIVA02G01310.1 Rosmarinic Acid 4CL medium pass
ONIVA02G06840.1 Rosmarinic Acid 4CL medium pass
ONIVA02G20770.1 Rosmarinic Acid 4CL low borderline
ONIVA02G31670.1 Rosmarinic Acid 4CL medium pass
ONIVA02G40540.1 Rosmarinic Acid 4CL low borderline
ONIVA03G02000.1 Rosmarinic Acid 4CL medium pass
ONIVA03G02180.1 Rosmarinic Acid 4CL medium pass
ONIVA03G02300.1 Rosmarinic Acid 4CL low borderline
ONIVA03G02300.2 Rosmarinic Acid 4CL low borderline
ONIVA03G03830.1 Rosmarinic Acid 4CL medium pass
ONIVA03G15380.1 Rosmarinic Acid 4CL medium pass
ONIVA03G15390.1 Rosmarinic Acid 4CL medium pass
ONIVA03G42850.1 Rosmarinic Acid 4CL low borderline
ONIVA04G05740.1 Rosmarinic Acid 4CL medium pass
ONIVA04G09400.1 Rosmarinic Acid 4CL low borderline
ONIVA04G09400.2 Rosmarinic Acid 4CL low borderline
ONIVA04G24870.1 Rosmarinic Acid 4CL low borderline
ONIVA04G27960.1 Rosmarinic Acid 4CL medium pass
ONIVA04G29290.1 Rosmarinic Acid 4CL medium pass
ONIVA05G02180.1 Rosmarinic Acid 4CL low borderline
ONIVA05G02180.2 Rosmarinic Acid 4CL low borderline
ONIVA05G11870.1 Rosmarinic Acid 4CL low borderline
ONIVA06G03690.1 Rosmarinic Acid 4CL low borderline
ONIVA06G05170.1 Rosmarinic Acid 4CL low borderline
ONIVA06G27530.1 Rosmarinic Acid 4CL medium pass
ONIVA07G08670.1 Rosmarinic Acid 4CL medium pass
ONIVA07G23470.1 Rosmarinic Acid 4CL medium pass
ONIVA08G01830.1 Rosmarinic Acid 4CL low borderline
ONIVA08G02740.1 Rosmarinic Acid 4CL medium pass
ONIVA08G08240.1 Rosmarinic Acid 4CL medium pass
ONIVA08G18110.1 Rosmarinic Acid 4CL medium pass
ONIVA09G20360.1 Rosmarinic Acid 4CL medium pass
ONIVA10G11750.1 Rosmarinic Acid 4CL medium pass
ONIVA11G04410.1 Rosmarinic Acid 4CL low borderline
ONIVA11G17100.1 Rosmarinic Acid 4CL low borderline
ONIVA12G02330.1 Rosmarinic Acid 4CL low borderline
ONIVA12G02330.2 Rosmarinic Acid 4CL low borderline
ONIVA12G02330.3 Rosmarinic Acid 4CL low borderline
ONIVA12G03850.1 Rosmarinic Acid 4CL medium pass
ONIVA12G03850.2 Rosmarinic Acid 4CL medium pass
ONIVA12G13450.1 Rosmarinic Acid 4CL medium pass