PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.86% Alkaloid pathway 23.19% Phenylpropanoid pathway 16.05% Flavonoid pathway 15.95% Rosmarinic acid pathway 7.82% Steroid pathway 7.14%
Family Distribution
BAHD 6.27% C4H 6.1% C3'H/CYP98A 5.9% UGT 4.33% UFGT 4.1% 7DLGT 4.08% T3O 3.65% CYP76 3.16%
Other Families 62.41%
More Families (98)
IFS 158 3.1% 4CL 150 2.94% F3'H/CYP75B 136 2.67% POD 131 2.57% BR6OX2/CYP85A2 116 2.27% DWF4/CYP90B1 111 2.18% NMT 100 1.96% STR 99 1.94% F3H 99 1.94% CYP71 96 1.88% CAD 86 1.69% SMT1/SMT2/SMT3 82 1.61% CAS 82 1.61% TPS 77 1.51% GES 67 1.31% SGD 57 1.12% TRI/TRII 54 1.06% PYKS 53 1.04% IFR 50 0.98% CODM/T6ODM 48 0.94% H6H 48 0.94% T16H 46 0.9% G8O/G8H 46 0.9% COMT 44 0.86% CSE 43 0.84% CCR 43 0.84% LAC 42 0.82% RAS 41 0.8% SLS 40 0.78% HCT 40 0.78% PMT 39 0.76% GS 37 0.73% F5H/CYP84A 37 0.73% 16OMT 36 0.71% F3'5'H/CYP75A 36 0.71% ANR 36 0.71% FNS 35 0.69% CYP90D1 35 0.69% CYP51G1 34 0.67% PAL 33 0.65% CHS 31 0.61% DFR 31 0.61% BR6OX1/CYP85A1 29 0.57% NCS 26 0.51% IO 23 0.45% 8HGO 23 0.45% CPD/CYP90A1 23 0.45% CNMT 21 0.41% BBE 19 0.37% 7DLH 17 0.33% LAMT 16 0.31% COR 16 0.31% MVK 15 0.29% ANS/LDOX 14 0.27% TAT 14 0.27% ROT3/CYP90C1 13 0.25% FPPS 12 0.24% CCoAOMT 11 0.22% CPR 11 0.22% GGPPS 11 0.22% CYP80B1 10 0.2% XMT_MXMT_DXMT 10 0.2% SQS/FDFT1 10 0.2% CHI 9 0.18% AACT 9 0.18% MPO 8 0.16% FK 8 0.16% CYP80F1 7 0.14% HPPR 7 0.14% HMGR 7 0.14% TYDC_DDC 6 0.12% ADC 6 0.12% SMO1/SMO2 6 0.12% CYP719 5 0.1% TDC 4 0.08% DET2 4 0.08% MCT/IspD 4 0.08% DXS 4 0.08% ODC 3 0.06% ISY 3 0.06% FLS 3 0.06% HYD1 3 0.06% DWF1 3 0.06% PMK 3 0.06% HMGS 3 0.06% SQE 2 0.04% DWF5 2 0.04% MDS/IspF 2 0.04% MVD 2 0.04% HDR/IspH 2 0.04% IDI 2 0.04% 6OMT_4OMT_SOMT 1 0.02% DWF7 1 0.02% CPI1 1 0.02% DXR 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA11G21450.1 Alkaloid 7DLGT low borderline
ONIVA12G12170.1 Alkaloid 7DLGT low borderline
ONIVA12G14570.1 Alkaloid 7DLGT low borderline
ONIVA12G15260.2 Alkaloid 7DLGT low borderline
ONIVA12G15880.1 Alkaloid 7DLGT medium pass
ONIVA12G17550.1 Alkaloid 7DLGT low borderline
ONIVA12G18430.1 Alkaloid 7DLGT low borderline
ONIVA12G18720.1 Alkaloid 7DLGT low borderline