PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
Reset
Gene Pathway Family Confidence Status
ONIVA06G31220.1 Terpenoid BAHD low borderline
ONIVA07G06190.1 Terpenoid BAHD medium pass
ONIVA07G07510.1 Terpenoid BAHD medium pass
ONIVA07G11710.1 Terpenoid BAHD low borderline
ONIVA07G12230.1 Terpenoid BAHD medium pass
ONIVA07G12700.1 Terpenoid BAHD low borderline
ONIVA07G15800.1 Terpenoid BAHD medium pass
ONIVA07G16440.1 Terpenoid BAHD medium pass
ONIVA07G18900.1 Terpenoid BAHD medium pass
ONIVA07G19450.1 Terpenoid BAHD medium pass
ONIVA07G22370.1 Terpenoid BAHD low borderline
ONIVA07G24590.1 Terpenoid BAHD low borderline
ONIVA08G00250.1 Terpenoid BAHD medium pass
ONIVA08G00250.2 Terpenoid BAHD medium pass
ONIVA08G00890.1 Terpenoid BAHD low borderline
ONIVA08G01890.1 Terpenoid BAHD medium pass
ONIVA08G04370.1 Terpenoid BAHD low borderline
ONIVA08G13780.1 Terpenoid BAHD medium pass
ONIVA08G14040.1 Terpenoid BAHD medium pass
ONIVA08G17270.1 Terpenoid BAHD low borderline
ONIVA08G17320.1 Terpenoid BAHD low borderline
ONIVA08G24810.1 Terpenoid BAHD medium pass
ONIVA08G24810.2 Terpenoid BAHD medium pass
ONIVA08G25050.1 Terpenoid BAHD medium pass
ONIVA08G25350.1 Terpenoid BAHD medium pass
ONIVA08G26350.1 Terpenoid BAHD medium pass
ONIVA08G26680.2 Terpenoid BAHD low borderline
ONIVA08G26830.1 Terpenoid BAHD medium pass
ONIVA09G00320.1 Terpenoid BAHD medium pass
ONIVA09G00320.2 Terpenoid BAHD medium pass
ONIVA09G00320.3 Terpenoid BAHD medium pass
ONIVA09G00320.4 Terpenoid BAHD medium pass
ONIVA09G00320.5 Terpenoid BAHD medium pass
ONIVA09G00320.6 Terpenoid BAHD medium pass
ONIVA09G10320.1 Terpenoid BAHD medium pass
ONIVA09G12360.1 Terpenoid BAHD medium pass
ONIVA09G13490.1 Terpenoid BAHD low borderline
ONIVA09G16970.1 Terpenoid BAHD medium pass
ONIVA09G16970.2 Terpenoid BAHD medium pass
ONIVA09G16970.3 Terpenoid BAHD medium pass
ONIVA09G17200.1 Terpenoid BAHD medium pass
ONIVA09G17290.1 Terpenoid BAHD low borderline
ONIVA09G17750.1 Terpenoid BAHD medium pass
ONIVA09G18480.1 Terpenoid BAHD low borderline
ONIVA09G18480.2 Terpenoid BAHD low borderline
ONIVA09G19430.1 Terpenoid BAHD low borderline
ONIVA09G19960.1 Terpenoid BAHD medium pass
ONIVA10G00100.1 Terpenoid BAHD medium pass
ONIVA10G00110.1 Terpenoid BAHD medium pass
ONIVA10G00110.2 Terpenoid BAHD medium pass