PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
ONIVA11G20700.1 Terpenoid BAHD medium pass BAHD__00040__sp_Q41745_LPAT_MAIZE
ONIVA11G21340.1 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
ONIVA12G01290.1 Terpenoid BAHD medium pass BAHD__00085__sp_Q9M1K5_ZDH13_ARATH
ONIVA12G04970.1 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA12G05310.1 Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
ONIVA12G07470.1 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA12G10350.1 Terpenoid BAHD medium pass BAHD__00084__sp_Q9M115_ZDH16_ARATH
ONIVA12G11410.1 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
ONIVA12G11430.1 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
ONIVA12G11440.1 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
ONIVA12G12100.1 Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
ONIVA12G12100.2 Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
ONIVA12G12100.3 Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
ONIVA12G13500.1 Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
ONIVA12G13500.2 Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
ONIVA12G14110.1 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA12G14110.2 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA12G14110.3 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA12G14660.1 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
ONIVA12G15460.1 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH