PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
ONIVA03G28680.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G29240.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G35580.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G35600.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G36450.1 Phenylpropanoid C3'H/CYP98A medium pass
ONIVA03G36450.2 Phenylpropanoid C3'H/CYP98A medium pass
ONIVA03G36450.3 Phenylpropanoid C3'H/CYP98A medium pass
ONIVA03G41980.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G43130.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G43130.2 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G00050.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G01000.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G01030.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G02070.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G02070.2 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G02330.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G02400.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G06510.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G09580.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G13750.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G14400.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G14400.2 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G14400.3 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G14400.4 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G20010.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G20700.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G20730.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G20950.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G21710.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G21770.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA04G25670.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G27320.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G28680.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G28730.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA04G28740.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G00130.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G02390.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G03810.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G05890.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G07190.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G07890.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G13310.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G14050.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA05G14660.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G15200.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G16620.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G16630.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G17250.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G17270.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA05G17840.1 Phenylpropanoid C3'H/CYP98A medium borderline