PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
Reset
Gene Pathway Family Confidence Status Best Target
ONIVA05G11550.2 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
ONIVA05G11600.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
ONIVA05G11600.2 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
ONIVA05G11600.3 Phenylpropanoid CAD medium pass CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
ONIVA05G11600.4 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
ONIVA05G11610.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
ONIVA06G01080.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
ONIVA06G01080.2 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
ONIVA06G12090.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
ONIVA06G18310.1 Phenylpropanoid CAD low borderline CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
ONIVA06G26790.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
ONIVA06G28110.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
ONIVA06G28110.2 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
ONIVA07G10220.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
ONIVA08G00640.1 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
ONIVA08G00640.2 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
ONIVA08G02650.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
ONIVA08G05620.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
ONIVA08G09220.1 Phenylpropanoid CAD medium pass CAD__00013__sp_Q0JA75_CADH7_ORYSJ
ONIVA08G23310.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
ONIVA08G23310.2 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
ONIVA09G08480.1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
ONIVA09G08500.1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
ONIVA09G08510.1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
ONIVA09G08530.1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
ONIVA09G15600.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
ONIVA09G15600.2 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
ONIVA09G15600.4 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
ONIVA09G18850.1 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
ONIVA10G03100.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
ONIVA10G14120.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
ONIVA10G14120.2 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
ONIVA11G19210.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
ONIVA11G19220.1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
ONIVA12G12630.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
ONIVA12G12630.2 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM