PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
ONIVA06G18120.5 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA06G18120.6 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA06G22460.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA06G22480.1 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA06G22480.2 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA06G26790.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA08G02290.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA08G18530.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA08G18530.2 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA10G02790.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA10G02790.2 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA10G02800.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA10G02800.2 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA10G06480.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA11G03380.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA11G05880.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA11G09700.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA11G09710.1 Steroid CAS low borderline CAS__00004__sp_O82139_CAS1_PANGI
ONIVA11G09790.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA11G09790.2 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA11G09790.3 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
ONIVA11G09820.1 Steroid CAS medium pass CAS__00013__sp_Q9SLP9_CAS1_LUFAE
ONIVA11G09830.1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
ONIVA11G09840.1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
ONIVA11G09840.2 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA11G09840.3 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
ONIVA11G09840.4 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA11G17220.1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
ONIVA12G12630.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA12G12630.2 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA12G12630.3 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA12G18300.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL