PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP71
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Gene Pathway Family Confidence Status Best Target
ONIVA05G00210.1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA05G20500.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA05G23620.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA05G27470.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA05G29230.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G07930.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G07960.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G08560.1 Terpenoid CYP71 low borderline CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA06G14860.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G18770.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G18770.2 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G18990.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G26300.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G26310.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G26320.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G26330.1 Terpenoid CYP71 low borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G26340.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA06G29520.1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA06G29530.1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA06G29530.2 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA06G30530.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA07G03780.1 Terpenoid CYP71 low borderline CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA07G05910.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA08G00400.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA08G00410.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA08G00420.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA08G01960.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA08G26450.1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA08G26610.1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA09G03570.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA09G05200.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA09G18350.2 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA09G18350.3 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA09G18970.1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA10G02450.1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
ONIVA10G03020.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA10G10510.1 Terpenoid CYP71 low borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA10G10520.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA10G18800.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA11G03030.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA11G03030.2 Terpenoid CYP71 low borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA11G04800.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA11G11140.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA11G20640.1 Terpenoid CYP71 low borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA11G20640.3 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
ONIVA12G18900.1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO