PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
ONIVA04G14400.4 Steroid DWF4/CYP90B1 low borderline
ONIVA04G18400.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G25670.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G28680.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G28730.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G28740.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G03810.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G14660.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G15200.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G16630.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G17840.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G24320.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G29230.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G00090.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G00640.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA06G06820.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G06830.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G07760.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G07960.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G22560.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G22720.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G22790.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G23690.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G24910.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G25670.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G30530.1 Steroid DWF4/CYP90B1 low borderline
ONIVA07G09740.1 Steroid DWF4/CYP90B1 low borderline
ONIVA07G13050.1 Steroid DWF4/CYP90B1 low borderline
ONIVA07G13050.2 Steroid DWF4/CYP90B1 low borderline
ONIVA07G14740.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA08G01960.1 Steroid DWF4/CYP90B1 low borderline
ONIVA08G18790.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA08G19890.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA09G09320.1 Steroid DWF4/CYP90B1 low borderline
ONIVA09G18350.3 Steroid DWF4/CYP90B1 low borderline
ONIVA09G18630.1 Steroid DWF4/CYP90B1 low borderline
ONIVA09G19940.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G01810.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G02190.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G03020.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G04040.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G05010.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G07870.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA10G17210.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G17790.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G17790.2 Steroid DWF4/CYP90B1 low borderline
ONIVA10G18230.1 Steroid DWF4/CYP90B1 low borderline
ONIVA11G01290.2 Steroid DWF4/CYP90B1 medium borderline
ONIVA11G02550.1 Steroid DWF4/CYP90B1 low borderline
ONIVA11G02550.2 Steroid DWF4/CYP90B1 low borderline